190 uses of TRIPAL_NOTICE
- chado_add_node_form_properties in legacy/
tripal_core/ api/ tripal_core.chado_nodes.properties.api.inc - chado_does_pub_exist in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - chado_expand_var in tripal_chado/
api/ tripal_chado.variables.api.inc - Retrieves fields, or tables that were excluded by default from a variable.
- chado_get_id_for_node in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_get_node_id in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_additional_dbxrefs_form in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_additional_dbxrefs_form_retreive in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_additional_dbxrefs_form_update_dbxrefs in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_properties_form in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_properties_form_retreive in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_properties_form_update_properties in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_relationships_form in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_relationships_form_retreive in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - chado_node_relationships_form_update_relationships in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - get_max_chado_rank in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - process_data_array_for_line in tripal_bulk_loader/
includes/ tripal_bulk_loader.loader.inc - Process the data array for a given line
- pub_search in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_admin_add_type_form in tripal/
includes/ TripalBundleUIController.inc - Form for creating tripal data types.
- tripal_analysis_delete_property in legacy/
tripal_analysis/ api/ tripal_analysis.DEPRECATED.inc - tripal_analysis_get_node in legacy/
tripal_analysis/ api/ tripal_analysis.DEPRECATED.inc - tripal_analysis_get_property in legacy/
tripal_analysis/ api/ tripal_analysis.DEPRECATED.inc - tripal_analysis_insert_property in legacy/
tripal_analysis/ api/ tripal_analysis.DEPRECATED.inc - tripal_analysis_register_child in legacy/
tripal_analysis/ api/ tripal_analysis.DEPRECATED.inc - tripal_analysis_unregister_child in legacy/
tripal_analysis/ api/ tripal_analysis.DEPRECATED.inc - tripal_analysis_update_property in legacy/
tripal_analysis/ api/ tripal_analysis.DEPRECATED.inc - tripal_bulk_loader_delete_field in tripal_bulk_loader/
api/ tripal_bulk_loader.DEPRECATED.inc - tripal_bulk_loader_delete_record in tripal_bulk_loader/
api/ tripal_bulk_loader.DEPRECATED.inc - tripal_bulk_loader_is_record_name_unique in tripal_bulk_loader/
api/ tripal_bulk_loader.DEPRECATED.inc - tripal_bulk_loader_load_data in tripal_bulk_loader/
includes/ tripal_bulk_loader.loader.inc - Tripal Bulk Loader
- tripal_bulk_loader_throw_error in tripal_bulk_loader/
includes/ tripal_bulk_loader.loader.inc - Used to throw a hopefully human-readable error.
- tripal_chado_feature_seq_extract_form in tripal_chado/
includes/ tripal_chado.seq_extract.inc - Form to choose which features to extract sequence for
- tripal_chado_views_add_field_to_integration in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_admin_disable_view in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_admin_enable_view in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_clone_integration in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_get_integration_array_for_chado_table in tripal_chado_views/
includes/ tripal_chado_views_integration.inc - Returns the array needed to integrate a given chado table with views
- tripal_chado_views_get_lightest_priority_setup in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_get_setup_id in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_get_table_lightest_priority in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_integration_add_entry in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_integration_export_entry in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_integration_remove_entry_by_setup_id in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_integration_remove_entry_by_table_name in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_integration_update_entry in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_is_integrated in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_is_lightest_priority_setup in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_make_view_compatible_with_external in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_rebuild_views_integrations in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_remove_join_from_integration in tripal_chado_views/
api/ tripal_chado_views.DEPRECATED.inc - tripal_chado_views_views_data in tripal_chado_views/
tripal_chado_views.views.inc - Implements hook_views_data().
- tripal_chado_vocab_get_vocabularies in tripal_chado/
includes/ tripal_chado.vocab_storage.inc - Implements hook_vocab_get_vocabularies().
- tripal_contact_add_contact in legacy/
tripal_contact/ api/ tripal_contact.DEPRECATED.inc - tripal_contact_delete_property in legacy/
tripal_contact/ api/ tripal_contact.DEPRECATED.inc - tripal_contact_get_property in legacy/
tripal_contact/ api/ tripal_contact.DEPRECATED.inc - tripal_contact_insert_property in legacy/
tripal_contact/ api/ tripal_contact.DEPRECATED.inc - tripal_contact_update_property in legacy/
tripal_contact/ api/ tripal_contact.DEPRECATED.inc - tripal_core_chado_delete in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_chado_get_foreign_key in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_chado_insert in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_chado_node_cleanup_orphaned in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_chado_node_sync_form in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_chado_node_sync_records in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_chado_schema_exists in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_chado_select in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_chado_update in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_create_custom_table in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_delete_property in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_delete_property_by_id in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_edit_custom_table in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_expand_chado_vars in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_generate_chado_var in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_get_chado_tables in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_get_chado_table_schema in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_get_chado_version in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_get_property in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_get_token_value_for_property in legacy/
tripal_core/ includes/ tripal_core.search.inc - Retrieve values for all tokens for an entity property getter function.
- tripal_core_insert_property in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_is_chado_installed in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_is_chado_local in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_report_error in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - @todo Remove. This was not in Tripal 1.x.
- tripal_core_schema_exists in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_update_property in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_core_update_property_by_id in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_create_moddir in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_create_mod_subdir in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_custom_tables_get_table_id in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_cv_add_cv in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_add_cvterm in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_add_obo_ref in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_admin_set_defaults_form in legacy/
tripal_cv/ includes/ tripal_cv.cv_defaults.inc - tripal_cv_cvterm_name_autocomplete in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cv in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cvterm_by_id in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cvterm_by_name in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cvterm_by_synonym in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cvterm_options in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cv_by_id in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cv_by_name in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cv_id in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cv_options in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_submit_obo_job in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_cv_update_cvtermpath in legacy/
tripal_cv/ api/ tripal_cv.DEPRECATED.inc - tripal_db_add_db in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_add_dbxref in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_add_dbxref_link in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_get_db in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_get_dbxref in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_get_dbxref_by_accession in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_get_db_by_db_id in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_get_db_by_name in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_get_db_options in legacy/
tripal_db/ api/ tripal_db.DEPRECATED.inc - tripal_db_set_active in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_featuremap_add_featuremap_dbxref in legacy/
tripal_featuremap/ api/ tripal_featuremap.DEPRECATED.inc - tripal_featuremap_delete_property in legacy/
tripal_featuremap/ api/ tripal_featuremap.DEPRECATED.inc - tripal_featuremap_get_property in legacy/
tripal_featuremap/ api/ tripal_featuremap.DEPRECATED.inc - tripal_featuremap_insert_property in legacy/
tripal_featuremap/ api/ tripal_featuremap.DEPRECATED.inc - tripal_featuremap_update_property in legacy/
tripal_featuremap/ api/ tripal_featuremap.DEPRECATED.inc - tripal_feature_add_cvterm in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_add_dbxref in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_delete_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_delete_property_by_id in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_get_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_insert_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_update_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_update_property_by_id in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_delete_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_delete_property_by_id in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_get_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_insert_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_reverse_complement in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_update_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_update_property_by_id in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_file_directory_path in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - @todo Remove. This was not in Tripal 1.x.
- tripal_get_chado_custom_schema in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_get_job_end in tripal/
api/ tripal.DEPRECATED.api.inc - DEPRECATED
- tripal_get_job_start in tripal/
api/ tripal.DEPRECATED.api.inc - DEPRECATED
- tripal_get_job_submit_date in tripal/
api/ tripal.DEPRECATED.api.inc - DEPRECATED
- tripal_get_max_chado_rank in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_get_moddir in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_get_module_active_jobs in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_jobs_cancel in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_jobs_check_running in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_jobs_get_end_time in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_jobs_get_start_time in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_jobs_get_submit_date in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_jobs_launch in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_jobs_rerun in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_job_set_progress in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_library_delete_property in legacy/
tripal_library/ api/ tripal_library.DEPRECATED.inc - tripal_library_get_property in legacy/
tripal_library/ api/ tripal_library.DEPRECATED.inc - tripal_library_insert_property in legacy/
tripal_library/ api/ tripal_library.DEPRECATED.inc - tripal_library_update_property in legacy/
tripal_library/ api/ tripal_library.DEPRECATED.inc - tripal_mviews_action in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_mviews_get_mview_id in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_organism_get_image_url in legacy/
tripal_organism/ api/ tripal_organism.DEPRECATED.inc - tripal_organism_get_organism_by_nid in legacy/
tripal_organism/ api/ tripal_organism.DEPRECATED.inc - tripal_organism_get_organism_by_organism_id in legacy/
tripal_organism/ api/ tripal_organism.DEPRECATED.inc - tripal_organism_get_synced in legacy/
tripal_organism/ api/ tripal_organism.DEPRECATED.inc - tripal_project_delete_property in legacy/
tripal_project/ api/ tripal_project.DEPRECATED.inc - tripal_project_get_property in legacy/
tripal_project/ api/ tripal_project.DEPRECATED.inc - tripal_project_insert_property in legacy/
tripal_project/ api/ tripal_project.DEPRECATED.inc - tripal_project_update_property in legacy/
tripal_project/ api/ tripal_project.DEPRECATED.inc - tripal_pub_add_publication in tripal_chado/
includes/ loaders/ tripal_chado.pub_importers.inc - Adds a new publication to the Chado, along with all properties and database cross-references. If the publication does not already exist in Chado then it is added. If it does exist nothing is done. If the $update parameter is TRUE then the…
- tripal_pub_add_pub_dbxref in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_delete_property in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_get_property in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_get_pubs_by_dbxref in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_get_pubs_by_title_type_pyear_series in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_get_pub_by_uniquename in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_get_raw_data in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_get_remote_search_results in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_import_by_dbxref in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_import_publications in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_import_publications_by_import_id in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_insert_property in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_update_property in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_pub_update_publications in legacy/
tripal_pub/ api/ tripal_pub.DEPRECATED.inc - tripal_report_error in tripal/
api/ tripal.notice.api.inc - Provide better error notice for Tripal.
- tripal_search_update_default_index in legacy/
tripal_core/ includes/ tripal_core.search.inc - The Search API provides a default node index which has a number of node-specific fields enabled by default. We want to ensure our chado fields are also enabled by default thus making for easier enabling of Tripal search.
- tripal_set_message in tripal/
api/ tripal.notice.api.inc - Display messages to tripal administrators.
- tripal_stock_get_all_stocks in legacy/
tripal_stock/ api/ tripal_stock.DEPRECATED.inc - tripal_stock_get_stocks in legacy/
tripal_stock/ api/ tripal_stock.DEPRECATED.inc - tripal_stock_get_stocks_by_stockprop in legacy/
tripal_stock/ api/ tripal_stock.DEPRECATED.inc - tripal_stock_get_stock_by_name_identifier in legacy/
tripal_stock/ api/ tripal_stock.DEPRECATED.inc - tripal_stock_get_stock_by_nid in legacy/
tripal_stock/ api/ tripal_stock.DEPRECATED.inc - tripal_stock_get_stock_by_stock_id in legacy/
tripal_stock/ api/ tripal_stock.DEPRECATED.inc - tripal_update_mview in legacy/
tripal_core/ api/ tripal_core.DEPRECATED.inc - tripal_vocabulary_import_form in tripal/
includes/ tripal.admin.inc - Provides a form for importing vocabularies and their terms.
- tripal_vocabulary_import_form_submit in tripal/
includes/ tripal.admin.inc - _state
- tripal_vocabulary_import_form_validate in tripal/
includes/ tripal.admin.inc - _state