Tripal Bulk Loader Module

  1. 2.x tripal_bulk_loader/tripal_bulk_loader.module tripal_bulk_loader
  2. 1.x tripal_bulk_loader/tripal_bulk_loader.module tripal_bulk_loader

Functions implementing the Tripal Generic tab-delimited chado data loader

File

tripal_bulk_loader/tripal_bulk_loader.module, line 9
Provides general functions for the tripal bulk loader.

Functions

Namesort descending Location Description
drush_tripal_bulk_loader_tripal_loader_cancel tripal_bulk_loader/tripal_bulk_loader.drush.inc Cancels the specified bulk loading job.
drush_tripal_bulk_loader_tripal_loader_progress tripal_bulk_loader/tripal_bulk_loader.drush.inc Code ran for the tripal-loader-progress drush command Display the progress of any running tripal bulk loading job.
drush_tripal_bulk_loader_tripal_loader_revert tripal_bulk_loader/tripal_bulk_loader.drush.inc Revert the records loaded by the last run of the specified loading job. This is only available if the specified loading job is keeping track of inserted IDs.
drush_tripal_bulk_loader_tripal_loader_submit tripal_bulk_loader/tripal_bulk_loader.drush.inc Submit or Re-submit the given bulk loading job.
drush_tripal_bulk_loader_tripal_loader_view tripal_bulk_loader/tripal_bulk_loader.drush.inc Returns the status/details of the specified bulk loading job.
process_data_array_for_line tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Process the data array for a given line
tblid_load tripal_bulk_loader/tripal_bulk_loader.module Implements hook_load() for the menu system.
tblid_to_arg tripal_bulk_loader/tripal_bulk_loader.module Implements hook_to_arg(). Ensures the arguement for the bulk loader templates path is correct
tripal_bulk_loader_add_foreignkey_to_values tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Handles foreign keys in the values array.
tripal_bulk_loader_add_loader_job_form tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Add Loader Job Form
tripal_bulk_loader_add_loader_job_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Add Loader Job Form (Submit)
tripal_bulk_loader_add_spreadsheetdata_to_values tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc This function adds the file data to the values array
tripal_bulk_loader_admin_jobs_listing tripal_bulk_loader/includes/tripal_bulk_loader.admin.inc Landing page for bulk loader admin. Ensures views are enabled and if not provides links to do so.
tripal_bulk_loader_coder_ignore tripal_bulk_loader/tripal_bulk_loader.module Implements hook_coder_ignore(). Defines the path to the file (tripal_bulk_loader.coder_ignores.txt) where ignore rules for coder are stored
tripal_bulk_loader_configuration_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.inc A Configuration form for this module
tripal_bulk_loader_configuration_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.inc A Configuration form for this module (Submit)
tripal_bulk_loader_defaultview_admin_job_listing tripal_bulk_loader/tripal_bulk_loader.views_default.inc Default Admin View for job management
tripal_bulk_loader_defaultview_admin_template_listing tripal_bulk_loader/tripal_bulk_loader.views_default.inc Default Admin View for template management
tripal_bulk_loader_delete tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Implements hook_delete(). Deletes the data when the delete button on the node form is clicked
tripal_bulk_loader_delete_constant_set_form tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Delete a constant set (exposed fields in template)
tripal_bulk_loader_delete_constant_set_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Delete the current constant set
tripal_bulk_loader_delete_template_base_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Delete Template Form This form allows admin to delete already existing templates
tripal_bulk_loader_delete_template_base_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Delete Template Form Submit
tripal_bulk_loader_delete_template_field_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Delete Field Form
tripal_bulk_loader_delete_template_field_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Delete Field Form
tripal_bulk_loader_delete_template_record_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Delete Record Form
tripal_bulk_loader_delete_template_record_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Delete Record Form
tripal_bulk_loader_disable tripal_bulk_loader/tripal_bulk_loader.install Implements hook_disable(). Disable default views when module is disabled
tripal_bulk_loader_drush_command tripal_bulk_loader/tripal_bulk_loader.drush.inc Implements hook_drush_command().
tripal_bulk_loader_duplicate_template_record_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Duplicate Record Form
tripal_bulk_loader_duplicate_template_record_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Delete Record Form
tripal_bulk_loader_edit_constant_set_form tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Edit a constant set (exposed fields in template)
tripal_bulk_loader_edit_constant_set_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Edit constants in the current constant set
tripal_bulk_loader_edit_template_record_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Edit Record Form
tripal_bulk_loader_edit_template_record_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Edit Record Form Submit
tripal_bulk_loader_edit_template_record_form_validate tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Implements hook_form_validate()
tripal_bulk_loader_export_template_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Export Template Form
tripal_bulk_loader_finish_loading tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Finishes the loading job by setting variables and exiting.
tripal_bulk_loader_flatten_array tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Flattens an array up to two levels Used for printing of arrays without taking up much space
tripal_bulk_loader_form tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Implements hook_form(). Used to gather the extra details stored with a Bulk Loading Job Node
tripal_bulk_loader_has_exposed_fields tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Check if a bulk loading job has exposed constants
tripal_bulk_loader_import_template_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Import Template Form
tripal_bulk_loader_import_template_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Import Template Form Submit
tripal_bulk_loader_init tripal_bulk_loader/tripal_bulk_loader.module Implements hook_init(). Used to add stylesheets and javascript files to the header
tripal_bulk_loader_insert tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Implements hook_insert(). Insert the data from the node form on Create content
tripal_bulk_loader_job_describe_args tripal_bulk_loader/tripal_bulk_loader.module Implements hook_job_describe_args() Specifically to make viewing past tripal jobs more readable for jobs registered by this module
tripal_bulk_loader_load tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Implements hook_load().
tripal_bulk_loader_load_data tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Tripal Bulk Loader
tripal_bulk_loader_menu tripal_bulk_loader/tripal_bulk_loader.module Implements hook_menu().
tripal_bulk_loader_modify_template_base_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc The main form reached at admin/tripal/tripal_bulk_loader/create and /edit
tripal_bulk_loader_modify_template_base_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Submit for tripal_bulk_loader_modify_template_base_form
tripal_bulk_loader_node_access tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Implement hook_access().
tripal_bulk_loader_node_info tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Implements hook_node_info().
tripal_bulk_loader_node_presave tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Implements hook_node_presave(). Acts on all node types.
tripal_bulk_loader_permission tripal_bulk_loader/tripal_bulk_loader.module Implements hook_permission().
tripal_bulk_loader_preprocess_tripal_bulk_loader_template tripal_bulk_loader/theme/tripal_bulk_loader.theme.inc Preprocessor function for the tripal_bulk_loader template
tripal_bulk_loader_progess_file_get_progress tripal_bulk_loader/tripal_bulk_loader.module Get the progress of the current constant set from the progress file
tripal_bulk_loader_progress_bar tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Used to display loader progress to the user
tripal_bulk_loader_progress_file_track_job tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Keep track of progress in file rather then database
tripal_bulk_loader_regex_tranform_values tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Uses a supplied regex to transform spreadsheet values
tripal_bulk_loader_requirements tripal_bulk_loader/tripal_bulk_loader.install Implementation of hook_requirements().
tripal_bulk_loader_schema tripal_bulk_loader/tripal_bulk_loader.install Implements hook_schema().
tripal_bulk_loader_set_constants_form tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Set constants (exposed fields in template)
tripal_bulk_loader_set_constants_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Insert/update the constants associated with this node
tripal_bulk_loader_set_constants_form_validate tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Validate that the values entered exist in the database if indicated in hte template array
tripal_bulk_loader_template_fields_ahah tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc AHAH Function: Replace $form['fields'] in tripal_bulk_loader_add_template_field_form
tripal_bulk_loader_template_field_form tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Add Field Form
tripal_bulk_loader_template_field_form_default_values tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Determine default values needed for add/edit field form
tripal_bulk_loader_template_field_form_submit tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Add Field Submit
tripal_bulk_loader_template_field_form_validate tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc Implements hook_form_validate().
tripal_bulk_loader_theme tripal_bulk_loader/tripal_bulk_loader.module Implements hook_theme().
tripal_bulk_loader_throw_error tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Used to throw a hopefully human-readable error.
tripal_bulk_loader_update tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Implements hook_update(). Updates the data submitted by the node form on edit
tripal_bulk_loader_update_6150 tripal_bulk_loader/tripal_bulk_loader.install Implements hook_update_N().
tripal_bulk_loader_update_6151 tripal_bulk_loader/tripal_bulk_loader.install Implements hook_update_N().
tripal_bulk_loader_update_6152 tripal_bulk_loader/tripal_bulk_loader.install Implements hook_update_N().
tripal_bulk_loader_update_constant tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Inserts/Updates a tripal bulk loading job constant
tripal_bulk_loader_views_api tripal_bulk_loader/tripal_bulk_loader.module Implements hook_views_api().
tripal_bulk_loader_views_data tripal_bulk_loader/tripal_bulk_loader.views.inc Generates a dynamic data array for Views
tripal_bulk_loader_views_default_views tripal_bulk_loader/tripal_bulk_loader.views_default.inc Implements hook_views_default_views().

Files

Namesort descending Location Description
tripal_bulk_loader.admin.inc tripal_bulk_loader/includes/tripal_bulk_loader.admin.inc Bulk Loader Administration (Miscellaneous)
tripal_bulk_loader.admin.templates.inc tripal_bulk_loader/includes/tripal_bulk_loader.admin.templates.inc All functions in this file pertain to administrative management of bulk loader templates
tripal_bulk_loader.api.templates.inc tripal_bulk_loader/api/tripal_bulk_loader.api.templates.inc Provides functions for hooking into bulk loader functionality.
tripal_bulk_loader.chado_node.inc tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc Tripal Bulk Loader Node functionality (jobs).
tripal_bulk_loader.constants.inc tripal_bulk_loader/includes/tripal_bulk_loader.constants.inc Manages the constants form added to the tripal bulk loader node form
tripal_bulk_loader.drush.inc tripal_bulk_loader/tripal_bulk_loader.drush.inc Implements drush integration for this module
tripal_bulk_loader.install tripal_bulk_loader/tripal_bulk_loader.install Install/Uninstalls, Enables/Disables this module.
tripal_bulk_loader.loader.inc tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc Handles the actual loading of data.
tripal_bulk_loader.module tripal_bulk_loader/tripal_bulk_loader.module Provides general functions for the tripal bulk loader.
tripal_bulk_loader.views.inc tripal_bulk_loader/tripal_bulk_loader.views.inc Provides Drupal views integration excluding default views.
tripal_bulk_loader.views_default.inc tripal_bulk_loader/tripal_bulk_loader.views_default.inc Defines the tripal bulk loader default views.