100 calls to chado_select_record()

chado_add_node_form_dbxrefs in tripal_core/api/tripal_core.chado_nodes.dbxrefs.api.inc
Provides a form for adding to BASE_dbxref and dbxref tables
chado_add_node_form_dbxrefs_add_button_validate in tripal_core/api/tripal_core.chado_nodes.dbxrefs.api.inc
Validate the user input for creating a new dbxref Called by the add button in chado_add_node_form_dbxrefs
chado_add_node_form_properties in tripal_core/api/tripal_core.chado_nodes.properties.api.inc
chado_add_node_form_properties_add_button_validate in tripal_core/api/tripal_core.chado_nodes.properties.api.inc
Validate the user input for creating a new property Called by the add button in chado_add_node_form_properties
chado_add_node_form_relationships in tripal_core/api/tripal_core.chado_nodes.relationships.api.inc
Provides a form for adding to BASE_relationship and relationship tables
chado_add_node_form_relationships_add_button_validate in tripal_core/api/tripal_core.chado_nodes.relationships.api.inc
Validate the user input for creating a new relationship. Called by the add button in chado_add_node_form_relationships.
chado_contact_validate in tripal_contact/includes/tripal_contact.chado_node.inc
Implements hook_validate(). Validates submission of form when adding or updating a contact node.
chado_delete_property in tripal_core/api/tripal_core.chado_general.api.inc
Deletes a property for a given base table record using the property name
chado_expand_var in tripal_core/api/tripal_core.chado_variables.api.inc
Retrieves fields, or tables that were excluded by default from a variable.
chado_featuremap_insert in tripal_featuremap/includes/tripal_featuremap.chado_node.inc
Implements hook_insert().
chado_featuremap_update in tripal_featuremap/includes/tripal_featuremap.chado_node.inc
Implements hook_update(). Update nodes
chado_feature_insert in tripal_feature/includes/tripal_feature.chado_node.inc
Implements hook_insert().
chado_feature_update in tripal_feature/includes/tripal_feature.chado_node.inc
Implements hook_update().
chado_generate_var in tripal_core/api/tripal_core.chado_variables.api.inc
Generates an object containing the full details of a record(s) in Chado.
chado_get_property in tripal_core/api/tripal_core.chado_general.api.inc
Retrieve a property for a given base table record.
chado_get_record_with_property in tripal_core/api/tripal_core.chado_general.api.inc
Get all records in the base table assigned one or more properties.
chado_insert_property in tripal_core/api/tripal_core.chado_general.api.inc
Insert a property for a given base table.
chado_insert_record in tripal_core/api/tripal_core.chado_query.api.inc
Provides a generic routine for inserting into any Chado table
chado_library_form in tripal_library/includes/tripal_library.chado_node.inc
Implements hook_form().
chado_node_sync_records in tripal_core/api/tripal_core.chado_nodes.api.inc
Generic function for syncing records in Chado with Drupal nodes.
chado_organism_validate in tripal_organism/includes/tripal_organism.chado_node.inc
Implementation of hook_validate().
chado_project_form in tripal_project/includes/tripal_project.chado_node.inc
Implementation of hook_form().
chado_pub_form in tripal_pub/includes/tripal_pub.chado_node.inc
Implements hook_form().
chado_pub_validate in tripal_pub/includes/tripal_pub.chado_node.inc
Implements hook_validate().
chado_schema_get_foreign_key in tripal_core/api/tripal_core.chado_query.api.inc
Gets the value of a foreign key relationship
chado_stock_insert in tripal_stock/includes/tripal_stock.chado_node.inc
Implements hook_insert(). Inserts data from chado_stock_form() into drupal and chado
chado_stock_update in tripal_stock/includes/tripal_stock.chado_node.inc
Implements hook_update(). Handles Editing/Updating of main stock info
chado_update_property in tripal_core/api/tripal_core.chado_general.api.inc
Update a property for a given base table record and property name.
chado_update_record in tripal_core/api/tripal_core.chado_query.api.inc
Provides a generic routine for updating into any Chado table
drush_tripal_phylogeny_trp_delete_phylotree in tripal_phylogeny/tripal_phylogeny.drush.inc
Deletes a phylotree record.
drush_tripal_phylogeny_trp_update_phylotree in tripal_phylogeny/tripal_phylogeny.drush.inc
process_data_array_for_line in tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc
Process the data array for a given line
tripal_analysis_delete_analyses in tripal_analysis/includes/tripal_analysis.delete.inc
Function to actually delete the features indicated
tripal_analysis_validate in tripal_analysis/includes/tripal_analysis.chado_node.inc
This validation is being used for three activities: CASE A: Update a node that exists in both drupal and chado CASE B: Synchronizing a node from chado to drupal CASE C: Inserting a new node that exists in niether drupal nor chado
tripal_associate_cvterm in tripal_cv/api/tripal_cv.api.inc
Add a record to a cvterm linking table (ie: feature_cvterm)
tripal_associate_dbxref in tripal_db/api/tripal_db.api.inc
Add a record to a database reference linking table (ie: feature_dbxref)
tripal_bulk_loader_add_foreignkey_to_values in tripal_bulk_loader/includes/tripal_bulk_loader.loader.inc
Handles foreign keys in the values array.
tripal_core_chado_select in tripal_core/api/tripal_core.DEPRECATED.api.inc
tripal_cv_add_cvterm_form_fields in tripal_cv/includes/tripal_cv.cvterm_form.inc
Form fields in common between add/edit forms
tripal_cv_add_cv_form_fields in tripal_cv/includes/tripal_cv.cv_form.inc
Form fields in common between the cv add & edit form.
tripal_cv_cvterm_add_form_submit in tripal_cv/includes/tripal_cv.cvterm_form.inc
Adds new terms to an existing cv
tripal_cv_cvterm_add_form_validate in tripal_cv/includes/tripal_cv.cvterm_form.inc
Validate cv add form
tripal_cv_cvterm_edit_form_submit in tripal_cv/includes/tripal_cv.cvterm_form.inc
Edits existing controlled vocabulary terms
tripal_cv_cvterm_edit_form_validate in tripal_cv/includes/tripal_cv.cvterm_form.inc
Validate cvterm edit form
tripal_cv_form_fields_validate in tripal_cv/includes/tripal_cv.cv_form.inc
Generic validation form for shared fields of both the edit and add forms
tripal_cv_obo_add_cvterm_dbxref in tripal_cv/includes/tripal_cv.obo_loader.inc
Adds a database reference to a cvterm
tripal_cv_obo_add_cvterm_prop in tripal_cv/includes/tripal_cv.obo_loader.inc
Adds a property to a cvterm
tripal_cv_obo_add_dbxref in tripal_cv/includes/tripal_cv.obo_loader.inc
Adds a database cross reference to a cvterm
tripal_cv_obo_add_relationship in tripal_cv/includes/tripal_cv.obo_loader.inc
Adds a cvterm relationship
tripal_cv_obo_add_synonyms in tripal_cv/includes/tripal_cv.obo_loader.inc
Adds the synonyms to a term
tripal_cv_obo_get_term in tripal_cv/includes/tripal_cv.obo_loader.inc
Retreives the term array from the temp loading table for a given term id.
tripal_db_add_db_form_fields in tripal_db/includes/tripal_db.admin.inc
Fields commmon between the add/edit forms
tripal_db_form_fields_validate in tripal_db/includes/tripal_db.admin.inc
Generic form validation for shared fields of both the edit and add forms
tripal_featuremap_add_featuremap_dbxref in tripal_featuremap/api/tripal_featuremap.DEPRECATED.inc
tripal_feature_analysis_delete_property in tripal_feature/api/tripal_feature.DEPRECATED.inc
tripal_feature_analysis_get_property in tripal_feature/api/tripal_feature.DEPRECATED.inc
tripal_feature_analysis_insert_property in tripal_feature/api/tripal_feature.DEPRECATED.inc
tripal_feature_analysis_update_property in tripal_feature/api/tripal_feature.DEPRECATED.inc
tripal_feature_delete_features in tripal_feature/includes/tripal_feature.delete.inc
Function to actually delete the features indicated
tripal_feature_fasta_load_form in tripal_feature/includes/tripal_feature.fasta_loader.inc
The form to submit a fasta loading job
tripal_feature_job_describe_args in tripal_feature/tripal_feature.module
Implements hook_job_describe_args() in order to describe the various feature jobs to the tripal jobs interface.
tripal_feature_load_fasta_feature in tripal_feature/includes/tripal_feature.fasta_loader.inc
A helper function for tripal_feature_load_fasta() to load a single feature
tripal_feature_load_gff3 in tripal_feature/includes/tripal_feature.gff_loader.inc
Actually load a GFF3 file. This is the function called by tripal jobs
tripal_feature_load_gff3_alias in tripal_feature/includes/tripal_feature.gff_loader.inc
Load any aliases for a feature
tripal_feature_load_gff3_dbxref in tripal_feature/includes/tripal_feature.gff_loader.inc
Load the dbxref attribute for a feature
tripal_feature_load_gff3_derives_from in tripal_feature/includes/tripal_feature.gff_loader.inc
Load the derives from attribute for a gff3 feature
tripal_feature_load_gff3_fasta in tripal_feature/includes/tripal_feature.gff_loader.inc
Load the FASTA sequences at the bottom of a GFF3 file
tripal_feature_load_gff3_feature in tripal_feature/includes/tripal_feature.gff_loader.inc
Create the feature record & link it to it's analysis
tripal_feature_load_gff3_featureloc in tripal_feature/includes/tripal_feature.gff_loader.inc
Insert the location of the feature
tripal_feature_load_gff3_ontology in tripal_feature/includes/tripal_feature.gff_loader.inc
Load the cvterms for a feature. Assumes there is a dbxref.accession matching a cvterm.name
tripal_feature_load_gff3_parents in tripal_feature/includes/tripal_feature.gff_loader.inc
Load the parents for a gff3 feature
tripal_feature_load_gff3_property in tripal_feature/includes/tripal_feature.gff_loader.inc
Load a preoprty (featurepop) for the feature
tripal_feature_load_gff3_target in tripal_feature/includes/tripal_feature.gff_loader.inc
Load the target attribute of a gff3 record
tripal_feature_node_presave in tripal_feature/includes/tripal_feature.chado_node.inc
Implements hook_node_presave(). Acts on all content types.
tripal_feature_preprocess_tripal_feature_bar_chart_type_organism_summary in tripal_feature/theme/tripal_feature.theme.inc
tripal_get_cvterm in tripal_cv/api/tripal_cv.api.inc
Retrieves a chado controlled vocabulary term variable
tripal_get_cvterm_select_options in tripal_cv/api/tripal_cv.api.inc
Create an options array to be used in a form element which provides a list of all chado cvterms
tripal_get_cv_select_options in tripal_cv/api/tripal_cv.api.inc
Create an options array to be used in a form element which provides a list of all chado cvs
tripal_get_publication in tripal_pub/api/tripal_pub.api.inc
Retrieves a chado publication array
tripal_insert_contact in tripal_contact/api/tripal_contact.api.inc
Adds a contact to the Chado contact table
tripal_insert_cv in tripal_cv/api/tripal_cv.api.inc
Adds a controlled vocabular to the CV table of Chado.
tripal_insert_cvterm in tripal_cv/api/tripal_cv.api.inc
Add's a controlled vocabulary term to Chado.
tripal_insert_db in tripal_db/api/tripal_db.api.inc
Adds a new database to the Chado DB table and returns the DB object.
tripal_insert_dbxref in tripal_db/api/tripal_db.api.inc
Add a database reference
tripal_library_features.tpl.php in tripal_library/theme/templates/tripal_library_features.tpl.php
tripal_organism_delete_organisms in tripal_organism/includes/tripal_organism.delete.inc
Function to actually delete the features indicated
tripal_organism_feature_browser.tpl.php in tripal_feature/theme/templates/tripal_organism_feature_browser.tpl.php
tripal_organism_job_describe_args in tripal_organism/tripal_organism.module
Implements hook_job_describe_args().
tripal_phylogeny_import_tree in tripal_phylogeny/includes/tripal_phylogeny.import_tree.inc
Iterates through the tree array and creates phylonodes in Chado.
tripal_phylogeny_ncbi_taxonomy_import in tripal_phylogeny/includes/tripal_phylogeny.taxonomy.inc
tripal_phylogeny_prepare_tree_viewer in tripal_phylogeny/theme/tripal_phylogeny.theme.inc
tripal_publication_exists in tripal_pub/api/tripal_pub.api.inc
The publication table of Chado only has a unique constraint for the uniquename of the publiation, but in reality a publication can be considered unique by a combination of the title, publication type, published year and series name (e.g. journal name…
tripal_pub_importers_list in tripal_pub/includes/tripal_pub.pub_importers.inc
A function to generate a table containing the list of publication importers
tripal_pub_importer_setup_form in tripal_pub/includes/tripal_pub.pub_importers.inc
The form used for creating publication importers.
tripal_pub_importer_setup_page in tripal_pub/includes/tripal_pub.pub_importers.inc
Creates the page that contains the publication importer setup form and test results.
tripal_search_publications in tripal_pub/includes/tripal_pub.pub_search.inc
Builds the SQL statement need to search Chado for the publications that match the user supplied criteria. Tpyically, this function is called by the search form generated by the tripal_pub_search_form() function but this function is included in the…
tripal_stock_get_stock_by_name_identifier in tripal_stock/api/tripal_stock.DEPRECATED.inc
tripal_stock_node_presave in tripal_stock/includes/tripal_stock.chado_node.inc
Implements hook_node_presave(). Acts on all content types.
tripal_validate_phylotree in tripal_phylogeny/api/tripal_phylogeny.api.inc
Validates an $options array for insert or update of a phylotree record.
tripal_views_handler_filter_select_id::get_select_options in tripal_views/views/handlers/tripal_views_handler_filter_select_id.inc
Provide the options used in the select list. Override this function in extended handlers to easily change option list.