65 calls to chado_generate_var()
- chado_analysis_load in tripal_analysis/
includes/ tripal_analysis.chado_node.inc - Implements hook_load(). When a node is requested by the user this function is called to allow us to add auxiliary data to the node object.
- chado_contact_load in tripal_contact/
includes/ tripal_contact.chado_node.inc - Implements hook_load().
- chado_example_load in tripal_example/
includes/ tripal_example.chado_node.inc - Implementation of hook_load(). This function is necessary to load into the $node object the fields of the table form Chado. For example for the example table, the chado_example_load() function adds in a example object which contains all of the fields…
- chado_expand_var in tripal_core/
api/ tripal_core.chado_variables.api.inc - Retrieves fields, or tables that were excluded by default from a variable.
- chado_featuremap_load in tripal_featuremap/
includes/ tripal_featuremap.chado_node.inc - Implements hook_load().
- chado_feature_load in tripal_feature/
includes/ tripal_feature.chado_node.inc - Implements hook_load().
- chado_get_property in tripal_core/
api/ tripal_core.chado_general.api.inc - Retrieve a property for a given base table record.
- chado_get_record_with_property in tripal_core/
api/ tripal_core.chado_general.api.inc - Get all records in the base table assigned one or more properties.
- chado_library_load in tripal_library/
includes/ tripal_library.chado_node.inc - Implements hook_load().
- chado_organism_load in tripal_organism/
includes/ tripal_organism.chado_node.inc - Implements hook_load().
- chado_phylotree_load in tripal_phylogeny/
includes/ tripal_phylogeny.chado_node.inc - Implements hook_load().
- chado_project_load in tripal_project/
includes/ tripal_project.chado_node.inc - Implementation of hook_load().
- chado_pub_load in tripal_pub/
includes/ tripal_pub.chado_node.inc - Implements hook_load().
- chado_stock_load in tripal_stock/
includes/ tripal_stock.chado_node.inc - Implements hook_load().
- chado_update_existing_node_urls in tripal_core/
api/ tripal_core.chado_nodes.title_and_path.api.inc - Tripal Job for updating all node URLs for a particular node type.
- tripal_analysis_node_insert in tripal_analysis/
includes/ tripal_analysis.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_contact_node_insert in tripal_contact/
includes/ tripal_contact.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_contact_publications.tpl.php in tripal_contact/
theme/ templates/ tripal_contact_publications.tpl.php - tripal_core_chado_hal_api in tripal_core/
includes/ tripal_core.ws_hal.inc - tripal_core_generate_chado_var in tripal_core/
api/ tripal_core.DEPRECATED.api.inc - tripal_cv_add_cvterm_form_fields in tripal_cv/
includes/ tripal_cv.cvterm_form.inc - Form fields in common between add/edit forms
- tripal_example_node_insert in tripal_example/
includes/ tripal_example.chado_node.inc - Implementation of hook node_insert().
- tripal_example_relationships.tpl.php in tripal_example/
theme/ templates/ tripal_example_relationships.tpl.php - tripal_featuremap_node_insert in tripal_featuremap/
includes/ tripal_featuremap.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_featuremap_publication.tpl.php in tripal_featuremap/
theme/ templates/ tripal_featuremap_publication.tpl.php - tripal_feature_nd_genotypes.tpl.php in tripal_natural_diversity/
theme/ templates/ tripal_feature_nd_genotypes.tpl.php - tripal_feature_node_insert in tripal_feature/
includes/ tripal_feature.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_feature_preprocess_tripal_feature_alignments in tripal_feature/
theme/ tripal_feature.theme.inc - tripal_feature_publications.tpl.php in tripal_feature/
theme/ templates/ tripal_feature_publications.tpl.php - tripal_get_analysis in tripal_analysis/
api/ tripal_analysis.api.inc - Retrieves an chado analysis variable
- tripal_get_cv in tripal_cv/
api/ tripal_cv.api.inc - Retrieves a chado controlled vocabulary variable
- tripal_get_cvterm in tripal_cv/
api/ tripal_cv.api.inc - Retrieves a chado controlled vocabulary term variable
- tripal_get_db in tripal_db/
api/ tripal_db.api.inc - Retrieves a chado db variable
- tripal_get_dbxref in tripal_db/
api/ tripal_db.api.inc - Retrieves a chado database reference variable
- tripal_get_fasta_defline in tripal_feature/
api/ tripal_feature.api.inc - Returns a definition line that can be used in a FASTA file
- tripal_get_feature_sequences in tripal_feature/
api/ tripal_feature.api.inc - Retrieves the sequences for a given feature.
- tripal_get_multiple_stocks in tripal_stock/
api/ tripal_stock.api.inc - Retrieves a chado stock variable
- tripal_get_organism in tripal_organism/
api/ tripal_organism.api.inc - Retrieves a chado organism variable
- tripal_get_publication in tripal_pub/
api/ tripal_pub.api.inc - Retrieves a chado publication array
- tripal_get_stock in tripal_stock/
api/ tripal_stock.api.inc - Retrieves a chado stock variable
- tripal_library_features.tpl.php in tripal_library/
theme/ templates/ tripal_library_features.tpl.php - tripal_library_node_insert in tripal_library/
includes/ tripal_library.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_library_publications.tpl.php in tripal_library/
theme/ templates/ tripal_library_publications.tpl.php - tripal_organism_feature_browser.tpl.php in tripal_feature/
theme/ templates/ tripal_organism_feature_browser.tpl.php - tripal_organism_node_insert in tripal_organism/
includes/ tripal_organism.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_phylogeny_ajax_get_tree_json in tripal_phylogeny/
tripal_phylogeny.module - Get json representation of a phylotree id.
- tripal_phylogeny_get_node_types_vocab in tripal_phylogeny/
includes/ tripal_phylogeny.import_tree.inc - tripal_phylogeny_import_tree_file in tripal_phylogeny/
includes/ tripal_phylogeny.import_tree.inc - Imports a tree file.
- tripal_phylogeny_node_insert in tripal_phylogeny/
includes/ tripal_phylogeny.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_phylogeny_node_update in tripal_phylogeny/
includes/ tripal_phylogeny.chado_node.inc - Implements hook_node_update(). Acts on all content types.
- tripal_phylogeny_taxonomy_view in tripal_phylogeny/
includes/ tripal_phylogeny.taxonomy.inc - Generates a page that contains the taxonomy view.
- tripal_project_node_insert in tripal_project/
includes/ tripal_project.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_project_publications.tpl.php in tripal_project/
theme/ templates/ tripal_project_publications.tpl.php - tripal_pub_base.tpl.php in tripal_pub/
theme/ templates/ tripal_pub_base.tpl.php - tripal_pub_get_publication_array in tripal_pub/
includes/ tripal_pub.pub_importers.inc - This function generates an array suitable for use with the tripal_pub_create_citation function for any publication already stored in the Chado tables.
- tripal_pub_node_insert in tripal_pub/
includes/ tripal_pub.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_pub_node_update in tripal_pub/
includes/ tripal_pub.chado_node.inc - Implements hook_node_update(). Acts on all content types.
- tripal_pub_relationships.tpl.php in tripal_pub/
theme/ templates/ tripal_pub_relationships.tpl.php - tripal_pub_search_page in tripal_pub/
includes/ tripal_pub.pub_search.inc - The page that contains the publication search form and the results for the search
- tripal_pub_teaser.tpl.php in tripal_pub/
theme/ templates/ tripal_pub_teaser.tpl.php - tripal_stock_nd_genotypes.tpl.php in tripal_natural_diversity/
theme/ templates/ tripal_stock_nd_genotypes.tpl.php - tripal_stock_nd_phenotypes.tpl.php in tripal_natural_diversity/
theme/ templates/ tripal_stock_nd_phenotypes.tpl.php - tripal_stock_node_insert in tripal_stock/
includes/ tripal_stock.chado_node.inc - Implements hook_node_insert(). Acts on all content types.
- tripal_stock_publications.tpl.php in tripal_stock/
theme/ templates/ tripal_stock_publications.tpl.php - tripal_validate_phylotree in tripal_phylogeny/
api/ tripal_phylogeny.api.inc - Validates an $options array for insert or update of a phylotree record.