54 uses of TRIPAL_WARNING
- chado_add_node_form_dbxrefs in tripal_core/
api/ tripal_core.chado_nodes.dbxrefs.api.inc - Provides a form for adding to BASE_dbxref and dbxref tables
- chado_add_node_form_properties in tripal_core/
api/ tripal_core.chado_nodes.properties.api.inc - chado_add_node_form_relationships in tripal_core/
api/ tripal_core.chado_nodes.relationships.api.inc - Provides a form for adding to BASE_relationship and relationship tables
- chado_delete_record in tripal_core/
api/ tripal_core.chado_query.api.inc - Provides a generic function for deleting a record(s) from any chado table
- chado_example_insert in tripal_example/
includes/ tripal_example.chado_node.inc - Implementation of hook_insert(). This function is called after the node is inserted into the database. We need it so that we can insert appropriate fields as provided by the user into the database. And so that we can link the new Drupal node to the…
- chado_example_update in tripal_example/
includes/ tripal_example.chado_node.inc - Implementation of hook_update(). This function runs after the node has been inserted into the Drupal schema and allows us to update the record in Chado.
- chado_expand_var in tripal_core/
api/ tripal_core.chado_variables.api.inc - Retrieves fields, or tables that were excluded by default from a variable.
- chado_featuremap_insert in tripal_featuremap/
includes/ tripal_featuremap.chado_node.inc - Implements hook_insert().
- chado_feature_add_synonyms in tripal_feature/
includes/ tripal_feature.chado_node.inc - Add synonyms to a feature
- chado_feature_insert in tripal_feature/
includes/ tripal_feature.chado_node.inc - Implements hook_insert().
- chado_feature_update in tripal_feature/
includes/ tripal_feature.chado_node.inc - Implements hook_update().
- chado_get_token_value in tripal_core/
api/ tripal_core.chado_nodes.title_and_path.api.inc - Retrieve the value of the token from the node based on the $token_info['location']
- chado_insert_record in tripal_core/
api/ tripal_core.chado_query.api.inc - Provides a generic routine for inserting into any Chado table
- chado_organism_validate in tripal_organism/
includes/ tripal_organism.chado_node.inc - Implementation of hook_validate().
- chado_phylotree_insert in tripal_phylogeny/
includes/ tripal_phylogeny.chado_node.inc - Implements hook_insert().
- chado_phylotree_update in tripal_phylogeny/
includes/ tripal_phylogeny.chado_node.inc - Implements hook_update().
- chado_select_record in tripal_core/
api/ tripal_core.chado_query.api.inc - Provides a generic routine for selecting data from a Chado table
- chado_set_node_url in tripal_core/
api/ tripal_core.chado_nodes.title_and_path.api.inc - Set the URL for a given node.
- chado_stock_insert in tripal_stock/
includes/ tripal_stock.chado_node.inc - Implements hook_insert(). Inserts data from chado_stock_form() into drupal and chado
- chado_stock_update in tripal_stock/
includes/ tripal_stock.chado_node.inc - Implements hook_update(). Handles Editing/Updating of main stock info
- chado_update_existing_node_urls in tripal_core/
api/ tripal_core.chado_nodes.title_and_path.api.inc - Tripal Job for updating all node URLs for a particular node type.
- process_data_array_for_line in tripal_bulk_loader/
includes/ tripal_bulk_loader.loader.inc - Process the data array for a given line
- tripal_add_mview in tripal_core/
api/ tripal_core.mviews.api.inc - Add a materialized view to the chado database to help speed data access. This function supports the older style where postgres column specifications are provided using the $mv_table, $mv_specs and $indexed variables. It also supports the newer…
- tripal_add_views_integration in tripal_views/
api/ tripal_views.api.inc - Add views integration records into the tripal_views* tables.
- tripal_associate_cvterm in tripal_cv/
api/ tripal_cv.api.inc - Add a record to a cvterm linking table (ie: feature_cvterm)
- tripal_associate_dbxref in tripal_db/
api/ tripal_db.api.inc - Add a record to a database reference linking table (ie: feature_dbxref)
- tripal_cv_obo_add_cvterm_dbxref in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a database reference to a cvterm
- tripal_feature_analysis_delete_property in tripal_feature/
api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_get_property in tripal_feature/
api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_insert_property in tripal_feature/
api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_update_property in tripal_feature/
api/ tripal_feature.DEPRECATED.inc - tripal_feature_load_fasta in tripal_feature/
includes/ tripal_feature.fasta_loader.inc - Actually load a fasta file. This is the function called by tripal jobs
- tripal_feature_load_fasta_feature in tripal_feature/
includes/ tripal_feature.fasta_loader.inc - A helper function for tripal_feature_load_fasta() to load a single feature
- tripal_feature_load_gff3_alias in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load any aliases for a feature
- tripal_feature_load_gff3_dbxref in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the dbxref attribute for a feature
- tripal_feature_load_gff3_derives_from in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the derives from attribute for a gff3 feature
- tripal_feature_load_gff3_fasta in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the FASTA sequences at the bottom of a GFF3 file
- tripal_feature_load_gff3_feature in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Create the feature record & link it to it's analysis
- tripal_feature_load_gff3_featureloc in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Insert the location of the feature
- tripal_feature_load_gff3_ontology in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the cvterms for a feature. Assumes there is a dbxref.accession matching a cvterm.name
- tripal_feature_load_gff3_parents in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the parents for a gff3 feature
- tripal_feature_load_gff3_property in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load a preoprty (featurepop) for the feature
- tripal_feature_load_gff3_target in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the target attribute of a gff3 record
- tripal_get_cvterm_default_select_options in tripal_cv/
api/ tripal_cv.api.inc - Create an options array to be used in a form element which provides a list of all chado cvterms. Unlike the tripal_get_cvterm_select_option, this function retreives the cvterms using the default vocabulary set for a given table and field. It will…
- tripal_insert_cv in tripal_cv/
api/ tripal_cv.api.inc - Adds a controlled vocabular to the CV table of Chado.
- tripal_insert_cvterm in tripal_cv/
api/ tripal_cv.api.inc - Add's a controlled vocabulary term to Chado.
- tripal_insert_db in tripal_db/
api/ tripal_db.api.inc - Adds a new database to the Chado DB table and returns the DB object.
- tripal_insert_dbxref in tripal_db/
api/ tripal_db.api.inc - Add a database reference
- tripal_insert_phylotree in tripal_phylogeny/
api/ tripal_phylogeny.api.inc - Inserts a phylotree record into Chado.
- tripal_report_error in tripal_core/
api/ tripal_core.tripal.api.inc - Provide better error notice for Tripal. If the environment variable 'TRIPAL_DEBUG' is set to 1 then this function will add backtrace information to the message.
- tripal_set_default_cv in tripal_cv/
api/ tripal_cv.api.inc - This function sets the default vocabulary for a given table and field.
- tripal_set_message in tripal_core/
api/ tripal_core.tripal.api.inc - Display messages to tripal administrators.
- tripal_update_phylotree in tripal_phylogeny/
api/ tripal_phylogeny.api.inc - Updates a phylotree record into Chado.
- tripal_views_views_data in tripal_views/
tripal_views.views.inc - Implements hook_views_data().