9 calls to tripal_cv_obo_quiterror()
- tripal_cv_load_obo_v1_2 in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Imports a given OBO file into Chado. This function is usually called by one of three wrapper functions: tripal_cv_load_obo_v1_2_id, tripal_cv_load_obo_v1_2_file or tirpal_cv_load_obo_v1_2_url. But, it can be called directly if the full path to an…
- tripal_cv_load_obo_v1_2_url in tripal_cv/
includes/ tripal_cv.obo_loader.inc - A wrapper function for importing the user specified OBO file into Chado by specifying the remote URL of the OBO. It requires that the file be in OBO v1.2 compatible format. This function is typically executed via the Tripal jobs management after a…
- tripal_cv_obo_add_cvterm_dbxref in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a database reference to a cvterm
- tripal_cv_obo_add_cvterm_prop in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a property to a cvterm
- tripal_cv_obo_add_dbxref in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a database cross reference to a cvterm
- tripal_cv_obo_add_relationship in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a cvterm relationship
- tripal_cv_obo_add_synonyms in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds the synonyms to a term
- tripal_cv_obo_process_term in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Uses the provided term array to add/update information to Chado about the term including the term, dbxref, synonyms, properties, and relationships.
- tripal_cv_obo_process_terms in tripal_cv/
includes/ tripal_cv.obo_loader.inc - OBO files are divided into a typedefs section and a terms section. This function loads the typedef terms from the OBO.