Retrieves a chado stock variable

Parameters

$identifier: An array with the key stating what the identifier is. Supported keys include any field in the stock table. See the chado_select_record() $values parameter for additional details including an example.

$options: An array of options. Supported keys include:

• Any keys supported by chado_generate_var(). See that function definition for additional details.

Return value

An array of stock objects matching the criteria.

Related topics

File

tripal_stock/api/tripal_stock.api.inc, line 146

Provides an application programming interface (API) to manage stocks

Code

function tripal_get_multiple_stocks($identifiers, $options = array()) {

  // Set Defaults
  if (!isset($options['include_fk'])) {
    // Tells chado_generate_var to only expand 1 level
    $options['include_fk'] = array('type_id' => TRUE, 'dbxref_id' => TRUE);
  }

  // Error Checking of parameters
  if (!is_array($identifiers)) {
    tripal_report_error(
    'tripal_stock_api', 
    TRIPAL_ERROR, 
    "tripal_get_stock: The identifier passed in is expected to be an array with the key
        matching a column name in the stock table (ie: stock_id or name). You passed in %identifier.", 
    array(
      '%identifier' => print_r($identifiers, TRUE)
    )
    );
  }
  elseif (empty($identifiers)) {
    tripal_report_error(
    'tripal_stock_api', 
    TRIPAL_ERROR, 
    "tripal_get_stock: You did not pass in anything to identify the stock you want. The identifier
        is expected to be an array with the key matching a column name in the stock table
        (ie: stock_id or name). You passed in %identifier.", 
    array(
      '%identifier' => print_r($identifiers, TRUE)
    )
    );
  }

  // If one of the identifiers is property then use chado_get_record_with_property()
  if (isset($identifiers['property'])) {
    $property = $identifiers['property'];
    unset($identifiers['property']);
    $stock = chado_get_record_with_property(
    array('table' => 'stock', 'base_records' => $identifiers), 
    array('type_name' => $property), 
    $options
    );
  }

  // Else we have a simple case and we can just use chado_generate_var to get the stock
  else {

    // Try to get the stock
    $stock = chado_generate_var(
    'stock', 
    $identifiers, 
    $options
    );
  }

  // Report an error if $stock is FALSE since then chado_generate_var has failed
  if ($stock === FALSE) {
    tripal_report_error(
    'tripal_stock_api', 
    TRIPAL_ERROR, 
    "tripal_get_stock: chado_generate_var() failed to return a stock based on the identifiers
        you passed in. You should check that your identifiers are correct, as well as, look
        for a chado_generate_var error for additional clues. You passed in %identifier.", 
    array(
      '%identifier' => print_r($identifiers, TRUE)
    )
    );
  }

  // Else, as far we know, everything is fine so give them their stock :)
  else {
    return $stock;
  }
}