operation__phylotree_vis.inc
File
tripal_chado/includes/TripalFields/operation__phylotree_vis/operation__phylotree_vis.incView source
- <?php
-
- class operation__phylotree_vis extends ChadoField {
-
- // The default lable for this field.
- public static $default_label = 'Phylogenetic tree visualisation';
-
- // The default description for this field.
- public static $description = 'Rendering of a phylogenetic tree.';
-
- // Provide a list of instance specific settings. These can be access within
- // the instanceSettingsForm. When the instanceSettingsForm is submitted
- // then Drupal with automatically change these settings for the instnace.
- // It is recommended to put settings at the instance level whenever possible.
- // If you override this variable in a child class be sure to replicate the
- // term_name, term_vocab, term_accession and term_fixed keys as these are
- // required for all TripalFields.
- public static $default_instance_settings = array(
- // The short name for the vocabulary (e.g. shcema, SO, GO, PATO, etc.).
- 'term_vocabulary' => 'operation',
- // The name of the term.
- 'term_name' => 'Phylogenetic tree visualisation',
- // The unique ID (i.e. accession) of the term.
- 'term_accession' => '0567',
- // Set to TRUE if the site admin is allowed to change the term
- // type. This will create form elements when editing the field instance
- // to allow the site admin to change the term settings above.
- 'term_fixed' => FALSE,
- );
-
- // The default widget for this field.
- public static $default_widget = 'operation__phylotree_vis_widget';
-
- // The default formatter for this field.
- public static $default_formatter = 'operation__phylotree_vis_formatter';
-
-
- /**
- * @see TripalField::validate()
- */
- public function validate($entity_type, $entity, $langcode, $items, &$errors) {
-
- // If we don't have an entity then we don't want to validate. The case
- // where this could happen is when a user is editing the field settings
- // and trying to set a default value. In that case there's no entity and
- // we don't want to validate. There will always be an entity for creation
- // and update operations of a content type.
- if (!$entity) {
- return;
- }
- $settings = $this->field['settings'];
- $field_name = $this->field['field_name'];
- $field_type = $this->field['type'];
- $field_table = $this->instance['settings']['chado_table'];
- $field_column = $this->instance['settings']['chado_column'];
-
- }
-
- /**
- * @see TripalField::load()
- */
- public function load($entity) {
-
- $record = $entity->chado_record;
- $settings = $this->instance['settings'];
-
- $field_name = $this->field['field_name'];
- $field_type = $this->field['type'];
- $field_table = $this->instance['settings']['chado_table'];
- $field_column = $this->instance['settings']['chado_column'];
-
- // Get the terms for each of the keys for the 'values' property.
- $label_term = 'operation:0567';
-
- // Set some defaults for the empty record.
- $entity->{$field_name}['und'][0]['value'] = array();
-
- if ($record) {
- $entity->{$field_name}['und'][0]['value'] = array(
- 'schema:url' => url('bio_data/' . $entity->id, array('absolute' => TRUE)),
- );
- }
- }
-
- /**
- * @see TripalField::elementInfo()
- */
- public function elementInfo() {
- $field_term = $this->getFieldTermID();
-
- return array(
- $field_term => array(
- 'operations' => array(),
- 'sortable' => FALSE,
- 'searchable' => FALSE,
- 'type' => 'string',
- 'type' => 'xs:complexType',
- 'readonly' => TRUE,
- 'elements' => array(
- 'schema:url' => array(
- 'searchabel' => FALSE,
- 'type' => 'xs:anyURI',
- 'readonly' => TRUE,
- 'required' => FALSE,
- ),
- ),
- )
- );
- }
- }