uo__unit.inc
File
tripal_chado/includes/TripalFields/uo__unit/uo__unit.incView source
- <?php
-
- class uo__unit extends ChadoField {
-
- // The default lable for this field.
- public static $default_label = 'Unit';
-
- // The default description for this field.
- public static $description = 'The unit of measurement.';
-
- // Provide a list of instance specific settings. These can be access within
- // the instanceSettingsForm. When the instanceSettingsForm is submitted
- // then Drupal with automatically change these settings for the instnace.
- // It is recommended to put settings at the instance level whenever possible.
- // If you override this variable in a child class be sure to replicate the
- // term_name, term_vocab, term_accession and term_fixed keys as these are
- // required for all TripalFields.
- public static $default_instance_settings = array(
- // The short name for the vocabulary (e.g. shcema, SO, GO, PATO, etc.).
- 'term_vocabulary' => 'UO',
- // The name of the term.
- 'term_name' => 'unit',
- // The unique ID (i.e. accession) of the term.
- 'term_accession' => '0000000',
- // Set to TRUE if the site admin is allowed to change the term
- // type. This will create form elements when editing the field instance
- // to allow the site admin to change the term settings above.
- 'term_fixed' => FALSE,
- );
-
- // The default widget for this field.
- public static $default_widget = 'UO__unit_widget';
-
- // The default formatter for this field.
- public static $default_formatter = 'UO__unit_formatter';
-
- /**
- * @see TripalField::load()
- */
- public function load($entity) {
-
- $record = $entity->chado_record;
- $settings = $this->instance['settings'];
-
- $field_name = $this->field['field_name'];
- $field_type = $this->field['type'];
- $field_table = $this->instance['settings']['chado_table'];
- $field_column = $this->instance['settings']['chado_column'];
-
-
- // Set some defaults for the empty record.
- $entity->{$field_name}['und'][0] = array(
- 'value' => '',
- );
-
- if ($record) {
- $entity->{$field_name}['und'][0]['value'] = $record->unittype_id->name;
- $entity->{$field_name}['und'][0]['chado-' . $field_table . '__unittype_id'] = $record->unittype_id->cvterm_id;
- $entity->{$field_name}['und'][0]['chado-cvterm__name'] = $record->unittype_id->name;
- $entity->{$field_name}['und'][0]['chado-cvterm__definition'] = $record->unittype_id->definition;
- $entity->{$field_name}['und'][0]['chado-cvterm__cv_id'] = $record->unittype_id->cv_id->cv_id;
- $entity->{$field_name}['und'][0]['chado-cv__name'] = $record->unittype_id->cv_id->name;
- }
- }
-
- /**
- * @see ChadoField::query()
- */
- public function query($query, $condition) {
- $chado_table = $this->instance['settings']['chado_table']; // featuremap
- $chado_field = $this->instance['settings']['chado_column']; // unittype_id
-
- $alias = $this->field['field_name'];
- $operator = $condition['operator'];
-
- $this->queryJoinOnce($query, 'cvterm', $alias, "base.$chado_field = $alias.cvterm_id");
- $query->condition("$alias.name", $condition['value'], $operator);
- }
-
- /**
- * @see ChadoField::query()
- */
- public function queryOrder($query, $order) {
- $chado_table = $this->instance['settings']['chado_table']; // featuremap
- $chado_field = $this->instance['settings']['chado_column']; // unittype_id
-
- $alias = $this->field['field_name'];
-
- $this->queryJoinOnce($query, 'cvterm', $alias, "base.$chado_field = $alias.cvterm_id");
- $query->orderBy("$alias.name", $order['direction']);
- }
- }