Overrides TripalImporter::run

See also

TripalImporter::run()

File

tripal_chado/includes/TripalImporter/GFF3Importer.inc, line 297

Class

GFF3Importer

Code

public function run() {

  $arguments = $this->arguments['run_args'];
  $file_path = $this->arguments['files'][0]['file_path'];

  $organism_id = $arguments['organism_id'];
  $analysis_id = $arguments['analysis_id'];
  $add_only = $arguments['add_only'];
  $update = $arguments['update'];
  $refresh = FALSE;
  $remove = FALSE;
  $use_transaction = $arguments['use_transaction'];
  $target_organism_id = $arguments['target_organism_id'];
  $target_type = $arguments['target_type'];
  $create_target = $arguments['create_target'];
  $start_line = $arguments['line_number'];
  $landmark_type = $arguments['landmark_type'];
  $alt_id_attr = $arguments['alt_id_attr'];
  $create_organism = $arguments['create_organism'];
  $re_mrna = $arguments['re_mrna'];
  $re_protein = $arguments['re_protein'];

  $this->loadGFF3($file_path, $organism_id, $analysis_id, 
  $add_only, $update, $refresh, $remove, $use_transaction, 
  $target_organism_id, $target_type, $create_target, 
  $start_line, $landmark_type, $alt_id_attr, $create_organism, 
  $re_mrna, $re_protein);
}