Parameters

$details: The following arguments are supported:

• obo_id: (required) The ID of the ontology to be imported.

Overrides TripalImporter::run

See also

TripalImporter::run()

File

tripal_chado/includes/TripalImporter/OBOImporter.inc, line 387

Class

OBOImporter

Code

public function run() {

  $arguments = $this->arguments['run_args'];
  $obo_id = $arguments['obo_id'];

  // Make sure the $obo_id is valid
  $obo = db_select('tripal_cv_obo', 'tco')
    ->fields('tco')
    ->condition('obo_id', $obo_id)
    ->execute()
    ->fetchObject();
  if (!$obo) {
    throw new Exception("Invalid OBO ID provided: '$obo_id'.");
  }

  $this->loadOBO_v1_2_id($obo);
}