25 calls to tripal_get_cvterm()
- chado_add_node_form_properties in tripal_core/
api/ tripal_core.chado_nodes.properties.api.inc - chado_contact_insert in tripal_contact/
includes/ tripal_contact.chado_node.inc - Implements of hook_insert().
- chado_contact_update in tripal_contact/
includes/ tripal_contact.chado_node.inc - Implements hook_update
- chado_example_insert in tripal_example/
includes/ tripal_example.chado_node.inc - Implementation of hook_insert(). This function is called after the node is inserted into the database. We need it so that we can insert appropriate fields as provided by the user into the database. And so that we can link the new Drupal node to the…
- chado_example_validate in tripal_example/
includes/ tripal_example.chado_node.inc - Implementation of hook_validate
- chado_feature_validate in tripal_feature/
includes/ tripal_feature.chado_node.inc - Implementation of hook_validate().
- chado_library_insert in tripal_library/
includes/ tripal_library.chado_node.inc - Implements hook_insert().
- chado_library_update in tripal_library/
includes/ tripal_library.chado_node.inc - Implements hook_update().
- chado_project_insert in tripal_project/
includes/ tripal_project.chado_node.inc - Implementation of hook_insert().
- chado_project_update in tripal_project/
includes/ tripal_project.chado_node.inc - Implements hook_update().
- chado_pub_form in tripal_pub/
includes/ tripal_pub.chado_node.inc - Implements hook_form().
- chado_pub_insert in tripal_pub/
includes/ tripal_pub.chado_node.inc - Implements hook_insert().
- chado_pub_update in tripal_pub/
includes/ tripal_pub.chado_node.inc - Implements hook_update().
- tripal_cv_get_cvterm_by_id in tripal_cv/
api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cvterm_by_name in tripal_cv/
api/ tripal_cv.DEPRECATED.inc - tripal_cv_get_cvterm_by_synonym in tripal_cv/
api/ tripal_cv.DEPRECATED.inc - tripal_cv_obo_add_synonyms in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds the synonyms to a term
- tripal_feature_load_gff3 in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Actually load a GFF3 file. This is the function called by tripal jobs
- tripal_feature_load_gff3_derives_from in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the derives from attribute for a gff3 feature
- tripal_insert_contact in tripal_contact/
api/ tripal_contact.api.inc - Adds a contact to the Chado contact table
- tripal_organism_node_presave in tripal_organism/
includes/ tripal_organism.chado_node.inc - Implements hook_node_presave(). Acts on all content types.
- tripal_phylogeny_ncbi_taxonomy_import in tripal_phylogeny/
includes/ tripal_phylogeny.taxonomy.inc - tripal_publication_exists in tripal_pub/
api/ tripal_pub.api.inc - The publication table of Chado only has a unique constraint for the uniquename of the publiation, but in reality a publication can be considered unique by a combination of the title, publication type, published year and series name (e.g. journal name…
- tripal_pub_add_publication in tripal_pub/
includes/ tripal_pub.pub_importers.inc - Adds a new publication to the Chado, along with all properties and database cross-references. If the publication does not already exist in Chado then it is added. If it does exist nothing is done. If the $update parameter is TRUE then the…
- tripal_pub_PMID_parse_publication_type in tripal_pub/
includes/ importers/ tripal_pub.PMID.inc - Parses the section from the XML returned from PubMed that contains information about a publication