Chado Feature

  1. 2.x tripal_feature/api/tripal_feature.api.inc tripal_feature_api
  2. 3.x tripal_chado/api/modules/tripal_chado.feature.api.inc tripal_feature_api
  3. 1.x tripal_feature/api/tripal_feature.api.inc tripal_feature_api

Provides API functions specificially for managing feature records in Chado especially retrieving relationships and sequences derived from relationships and feature alignments.

Parent topics

Chado API
The Tripal Chado (tripal_chado) module provides an application programming interface (API) to support customizations and creation of new extensions using the Chado database schem as a data store.

File

tripal_chado/api/modules/tripal_chado.feature.api.inc, line 8
Provides API functions specificially for managing feature records in Chado.

Functions

Namesort descending Location Description
chado_autocomplete_feature tripal_chado/api/modules/tripal_chado.feature.api.inc Used for autocomplete in forms for identifying for publications.
chado_get_bulk_feature_sequences tripal_chado/api/modules/tripal_chado.feature.api.inc Retrieves the bulk sequences for a given feature.
chado_get_fasta_defline tripal_chado/api/modules/tripal_chado.feature.api.inc Returns a definition line that can be used in a FASTA file.
chado_get_feature_sequences tripal_chado/api/modules/tripal_chado.feature.api.inc Retrieves the sequences for a given feature.
chado_get_location_string tripal_chado/api/modules/tripal_chado.feature.api.inc Returns a string representing a feature location in an alignment.
chado_reverse_compliment_sequence tripal_chado/api/modules/tripal_chado.feature.api.inc Performs a reverse compliment of a nucleotide sequence.