Chado Feature
- 2.x tripal_feature/api/tripal_feature.api.inc tripal_feature_api
- 3.x tripal_chado/api/modules/tripal_chado.feature.api.inc tripal_feature_api
- 1.x tripal_feature/api/tripal_feature.api.inc tripal_feature_api
Provides API functions specificially for managing feature records in Chado especially retrieving relationships and sequences derived from relationships and feature alignments.
Parent topics
File
- tripal_chado/
api/ modules/ tripal_chado.feature.api.inc, line 8 - Provides API functions specificially for managing feature records in Chado.
Functions
Name | Location | Description |
---|---|---|
chado_reverse_compliment_sequence |
tripal_chado/ |
Performs a reverse compliment of a nucleotide sequence. |
chado_get_location_string |
tripal_chado/ |
Returns a string representing a feature location in an alignment. |
chado_get_feature_sequences |
tripal_chado/ |
Retrieves the sequences for a given feature. |
chado_get_fasta_defline |
tripal_chado/ |
Returns a definition line that can be used in a FASTA file. |
chado_get_bulk_feature_sequences |
tripal_chado/ |
Retrieves the bulk sequences for a given feature. |
chado_autocomplete_feature |
tripal_chado/ |
Used for autocomplete in forms for identifying for publications. |