Chado Organism

  1. 2.x tripal_organism/api/tripal_organism.api.inc tripal_organism_api
  2. 3.x tripal_chado/api/modules/tripal_chado.organism.api.inc tripal_organism_api
  3. 1.x tripal_organism/api/tripal_organism.api.inc tripal_organism_api

Provides API functions specificially for managing organism records in Chado.

Parent topics

Chado API
The Tripal Chado (tripal_chado) module provides an application programming interface (API) to support customizations and creation of new extensions using the Chado database schem as a data store.

File

tripal_chado/api/modules/tripal_chado.organism.api.inc, line 8
Provides API functions specificially for managing feature records in Chado.

Functions

Namesort descending Location Description
chado_abbreviate_infraspecific_rank tripal_chado/api/modules/tripal_chado.organism.api.inc A handy function to abbreviate the infraspecific rank.
chado_autocomplete_organism tripal_chado/api/modules/tripal_chado.organism.api.inc This function is intended to be used in autocomplete forms for searching for organisms that begin with the provided string.
chado_get_organism tripal_chado/api/modules/tripal_chado.organism.api.inc Retrieves a chado organism variable.
chado_get_organism_image_url tripal_chado/api/modules/tripal_chado.organism.api.inc Return the path for the organism image.
chado_get_organism_scientific_name tripal_chado/api/modules/tripal_chado.organism.api.inc Returns the full scientific name of an organism.
chado_get_organism_select_options tripal_chado/api/modules/tripal_chado.organism.api.inc Returns a list of organisms that are currently synced with Drupal to use in select lists.