Edits existing controlled vocabulary terms

File

tripal_chado/includes/tripal_chado.cv.inc, line 626

Code

function tripal_cv_cvterm_edit_form_submit($form, &$form_state) {

  $cv_id = array_key_exists('cv_id', $form_state['values']) ? trim($form_state['values']['cv_id']) : '';
  $name = array_key_exists('name', $form_state['values']) ? trim($form_state['values']['name']) : '';
  $definition = array_key_exists('definition', $form_state['values']) ? trim($form_state['values']['definition']) : '';
  $is_relationship = array_key_exists('is_relationship', $form_state['values']) ? trim($form_state['values']['is_relationship']) : '';
  $is_obsolete = array_key_exists('is_obsolete', $form_state['values']) ? trim($form_state['values']['is_obsolete']) : '';
  $cvterm_id = array_key_exists('cvterm_id', $form_state['values']) ? trim($form_state['values']['cvterm_id']) : '';
  $db_id = array_key_exists('db_id', $form_state['values']) ? trim($form_state['values']['db_id']) : '';
  $accession = array_key_exists('accession', $form_state['values']) ? trim($form_state['values']['accession']) : '';
  $op = array_key_exists('op', $form_state['values']) ? trim($form_state['values']['op']) : '';

  if ($op == 'Update') {
    // get the original cvterm_id
    $values = array('name' => $name, 'cv_id' => $cv_id);
    $results = chado_select_record('cvterm', array('cvterm_id'), $values);
    $cvterm = $results[0];

    // get the cv
    $values = array('cv_id' => $cv_id);
    $results = chado_select_record('cv', array('name'), $values);
    $cv = $results[0];

    // get the db
    $values = array('db_id' => $db_id);
    $results = chado_select_record('db', array('name'), $values);
    $db = $results[0];

    // now add the term
    $term = array(
      'name' => $name,
      'namespace' => $cv->name,
      'id' => $accession,
      'definition' => $definition,
      'is_obsolete' => $is_obsolete,
      'cv_name' => $cv->name,
      'is_relationship' => $is_relationship,
      'db_name' => $db->name
    );

    $cvterm = chado_insert_cvterm($term, array('update_existing' => TRUE));
    if ($cvterm) {
      drupal_set_message('Term updated successfully.');
      drupal_goto('admin/tripal/loaders/chado_vocabs/chado_cvterms');
    }
    else {
      drupal_set_message('Could not add term. Check Drupal recent logs for error messages.', 'error');
    }
  }
  if ($op == 'Delete') {
    $values = array('cvterm_id' => $cvterm_id);
    $success = chado_delete_record('cvterm', $values);
    if ($success) {
      drupal_set_message('Term deleted successfully.');
    }
    else {
      drupal_set_message('Could not delete term term. Check Drupal recent logs for error messages.', 'error');
    }
  }
}