47 calls to chado_insert_record()
- chado_analysis_insert in tripal_analysis/
includes/ tripal_analysis.chado_node.inc - Implements hook_insert(). When a new chado_analysis node is created we also need to add information to our chado_analysis table. This function is called on insert of a new node of type 'chado_analysis' and inserts the necessary information.
- chado_contact_insert in tripal_contact/
includes/ tripal_contact.chado_node.inc - Implements of hook_insert().
- chado_example_insert in tripal_example/
includes/ tripal_example.chado_node.inc - Implementation of hook_insert(). This function is called after the node is inserted into the database. We need it so that we can insert appropriate fields as provided by the user into the database. And so that we can link the new Drupal node to the…
- chado_featuremap_insert in tripal_featuremap/
includes/ tripal_featuremap.chado_node.inc - Implements hook_insert().
- chado_feature_insert in tripal_feature/
includes/ tripal_feature.chado_node.inc - Implements hook_insert().
- chado_insert_property in tripal_core/
api/ tripal_core.chado_general.api.inc - Insert a property for a given base table.
- chado_library_insert in tripal_library/
includes/ tripal_library.chado_node.inc - Implements hook_insert().
- chado_organism_insert in tripal_organism/
includes/ tripal_organism.chado_node.inc - Implements hook_insert().
- chado_project_insert in tripal_project/
includes/ tripal_project.chado_node.inc - Implementation of hook_insert().
- chado_pub_insert in tripal_pub/
includes/ tripal_pub.chado_node.inc - Implements hook_insert().
- chado_stock_insert in tripal_stock/
includes/ tripal_stock.chado_node.inc - Implements hook_insert(). Inserts data from chado_stock_form() into drupal and chado
- chado_stock_update in tripal_stock/
includes/ tripal_stock.chado_node.inc - Implements hook_update(). Handles Editing/Updating of main stock info
- chado_update_node_form_properties in tripal_core/
api/ tripal_core.chado_nodes.properties.api.inc - This function is used in hook_insert or hook_update and handles inserting of any new properties
- chado_update_node_form_relationships in tripal_core/
api/ tripal_core.chado_nodes.relationships.api.inc - This function is used in hook_insert or hook_update and handles inserting of relationships between the current nodetype and other memebers of the same nodetype
- process_data_array_for_line in tripal_bulk_loader/
includes/ tripal_bulk_loader.loader.inc - Process the data array for a given line
- tripal_associate_cvterm in tripal_cv/
api/ tripal_cv.api.inc - Add a record to a cvterm linking table (ie: feature_cvterm)
- tripal_associate_dbxref in tripal_db/
api/ tripal_db.api.inc - Add a record to a database reference linking table (ie: feature_dbxref)
- tripal_core_chado_insert in tripal_core/
api/ tripal_core.DEPRECATED.api.inc - tripal_cv_cv_add_form_submit in tripal_cv/
includes/ tripal_cv.cv_form.inc - Submit cv add form
- tripal_cv_obo_add_cvterm_dbxref in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a database reference to a cvterm
- tripal_cv_obo_add_cvterm_prop in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a property to a cvterm
- tripal_cv_obo_add_dbxref in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a database cross reference to a cvterm
- tripal_cv_obo_add_relationship in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds a cvterm relationship
- tripal_cv_obo_add_synonyms in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Adds the synonyms to a term
- tripal_cv_obo_parse in tripal_cv/
includes/ tripal_cv.obo_loader.inc - Parse the OBO file and populate the templ loading table
- tripal_db_db_add_form_submit in tripal_db/
includes/ tripal_db.admin.inc - Submit for add db form
- tripal_featuremap_add_featuremap_dbxref in tripal_featuremap/
api/ tripal_featuremap.DEPRECATED.inc - tripal_feature_load_fasta_feature in tripal_feature/
includes/ tripal_feature.fasta_loader.inc - A helper function for tripal_feature_load_fasta() to load a single feature
- tripal_feature_load_gff3 in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Actually load a GFF3 file. This is the function called by tripal jobs
- tripal_feature_load_gff3_alias in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load any aliases for a feature
- tripal_feature_load_gff3_dbxref in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the dbxref attribute for a feature
- tripal_feature_load_gff3_derives_from in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the derives from attribute for a gff3 feature
- tripal_feature_load_gff3_feature in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Create the feature record & link it to it's analysis
- tripal_feature_load_gff3_featureloc in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Insert the location of the feature
- tripal_feature_load_gff3_ontology in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the cvterms for a feature. Assumes there is a dbxref.accession matching a cvterm.name
- tripal_feature_load_gff3_parents in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load the parents for a gff3 feature
- tripal_feature_load_gff3_property in tripal_feature/
includes/ tripal_feature.gff_loader.inc - Load a preoprty (featurepop) for the feature
- tripal_insert_contact in tripal_contact/
api/ tripal_contact.api.inc - Adds a contact to the Chado contact table
- tripal_insert_cv in tripal_cv/
api/ tripal_cv.api.inc - Adds a controlled vocabular to the CV table of Chado.
- tripal_insert_cvterm in tripal_cv/
api/ tripal_cv.api.inc - Add's a controlled vocabulary term to Chado.
- tripal_insert_db in tripal_db/
api/ tripal_db.api.inc - Adds a new database to the Chado DB table and returns the DB object.
- tripal_insert_dbxref in tripal_db/
api/ tripal_db.api.inc - Add a database reference
- tripal_insert_phylotree in tripal_phylogeny/
api/ tripal_phylogeny.api.inc - Inserts a phylotree record into Chado.
- tripal_phylogeny_import_tree in tripal_phylogeny/
includes/ tripal_phylogeny.import_tree.inc - Iterates through the tree array and creates phylonodes in Chado.
- tripal_phylogeny_ncbi_taxonomy_import in tripal_phylogeny/
includes/ tripal_phylogeny.taxonomy.inc - tripal_pub_add_authors in tripal_pub/
includes/ tripal_pub.pub_importers.inc - Add one or more authors to a publication
- tripal_pub_add_publication in tripal_pub/
includes/ tripal_pub.pub_importers.inc - Adds a new publication to the Chado, along with all properties and database cross-references. If the publication does not already exist in Chado then it is added. If it does exist nothing is done. If the $update parameter is TRUE then the…