Submit a fasta loading job

Related topics

File

tripal_feature/includes/tripal_feature.fasta_loader.inc, line 305

Provides fasta loading functionality. Creates features based on their specification in a fasta file.

Code

function tripal_feature_fasta_load_form_submit($form, &$form_state) {
  global $user;

  $dfile = $form_state['storage']['dfile'];
  $organism_id = $form_state['values']['organism_id'];
  $type = trim($form_state['values']['seqtype']);
  $method = trim($form_state['values']['method']);
  $match_type = trim($form_state['values']['match_type']);
  $re_name = trim($form_state['values']['re_name']);
  $re_uname = trim($form_state['values']['re_uname']);
  $re_accession = trim($form_state['values']['re_accession']);
  $db_id = $form_state['values']['db_id'];
  $rel_type = $form_state['values']['rel_type'];
  $re_subject = trim($form_state['values']['re_subject']);
  $parent_type = trim($form_state['values']['parent_type']);
  $analysis_id = $form_state['values']['analysis_id'];

  if ($method == 0) {
    $method = 'Insert only';
  }
  if ($method == 1) {
    $method = 'Update only';
  }
  if ($method == 2) {
    $method = 'Insert and update';
  }

  if ($match_type == 0) {
    $match_type = 'Name';
  }

  if ($match_type == 1) {
    $match_type = 'Unique name';
  }

  $args = array($dfile, $organism_id, $type, $re_name, $re_uname, $re_accession, $db_id, $rel_type,
    $re_subject, $parent_type, $method, $user->uid, $analysis_id, $match_type
  );

  $fname = preg_replace("/.*\/(.*)/", "$1", $dfile);
  tripal_add_job("Import FASTA file: $fname", 'tripal_feature', 'tripal_feature_load_fasta', $args, $user->uid);
}