File

tripal_featuremap/tripal_featuremap.install, line 119

@todo Add file header description

Code

function tripal_featuremap_add_cvterms() {

  // add cvterms for the map unit types
  tripal_cv_add_cvterm(array('name' => 'cM', 'def' => 'Centimorgan units'), 
  'featuremap_units', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'bp', 'def' => 'Base pairs units'), 
  'featuremap_units', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'bin_unit', 'def' => 'The bin unit'), 
  'featuremap_units', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'marker_order', 'def' => 'Units simply to define marker order.'), 
  'featuremap_units', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'undefined', 'def' => 'A catch-all for an undefined unit type'), 
  'featuremap_units', 0, 1, 'tripal');

  tripal_cv_add_cvterm(array('name' => 'start', 'def' => 'The start coordinate for a map feature.'), 
  'featurepos_property', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'stop', 'def' => 'The end coordinate for a map feature'), 
  'featurepos_property', 0, 1, 'tripal');

  // add cvterms for map properties
  tripal_cv_add_cvterm(array('name' => 'Map Dbxref', 'def' => 'A unique identifer for the map in a remote database.  The format is a database abbreviation and a unique accession separated by a colon.  (e.g. Gramene:tsh1996a)'), 
  'featuremap_property', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'Map Type', 'def' => 'The type of Map (e.g. QTL, Physical, etc.)'), 
  'featuremap_property', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'Genome Group', 'def' => ''), 
  'featuremap_property', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'URL', 'def' => 'A univeral resource locator (URL) reference where the publication can be found.  For maps found online, this would be the web address for the map.'), 
  'featuremap_property', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'Population Type', 'def' => 'A brief descriptoin of the population type used to generate the map (e.g. RIL, F2, BC1, etc).'), 
  'featuremap_property', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'Population Size', 'def' => 'The size of the population used to construct the map.'), 
  'featuremap_property', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'Methods', 'def' => 'A brief description of the methods used to construct the map.'), 
  'featuremap_property', 0, 1, 'tripal');
  tripal_cv_add_cvterm(array('name' => 'Software', 'def' => 'The software used to construct the map.'), 
  'featuremap_property', 0, 1, 'tripal');

}