Feature Map Module
- 2.x tripal_featuremap/tripal_featuremap.module tripal_featuremap
- 1.x tripal_featuremap/tripal_featuremap.module tripal_featuremap
Provides functions for managing chado maps including creating details pages for each map
Parent topics
File
- tripal_featuremap/
tripal_featuremap.module, line 3
Functions
Name |
Location | Description |
|---|---|---|
| chado_featuremap_access |
tripal_featuremap/ |
Set the permission types that the module uses. |
| chado_featuremap_delete |
tripal_featuremap/ |
Delete data from drupal and chado databases when a node is deleted |
| chado_featuremap_form |
tripal_featuremap/ |
When editing or creating a new node of type 'chado_featuremap' we need a form. This function creates the form that will be used for this. |
| chado_featuremap_insert |
tripal_featuremap/ |
When a new chado_featuremap node is created we also need to add information to our chado_featuremap table. This function is called on insert of a new node of type 'chado_featuremap' and inserts the necessary information. |
| chado_featuremap_load |
tripal_featuremap/ |
When a node is requested by the user this function is called to allow us to add auxiliary data to the node object. |
| chado_featuremap_update |
tripal_featuremap/ |
Update nodes |
| chado_featuremap_validate |
tripal_featuremap/ |
validates submission of form when adding or updating a map node |
| chado_featuremap_view |
tripal_featuremap/ |
This function customizes the view of the chado_featuremap node. It allows us to generate the markup. This function is required for node [Preview] |
| get_tripal_featuremap_admin_form_cleanup_set |
tripal_featuremap/ |
|
| get_tripal_featuremap_admin_form_reindex_set |
tripal_featuremap/ |
|
| get_tripal_featuremap_admin_form_sync_set |
tripal_featuremap/ |
|
| get_tripal_featuremap_admin_form_taxonomy_set |
tripal_featuremap/ |
|
| theme_tripal_featuremap_search_index |
tripal_featuremap/ |
This function is an extension of the chado_feature_view and chado_organism_view by providing the markup for the map object THAT WILL BE INDEXED. |
| tripal_featuremap_add_taxonomy |
tripal_featuremap/ |
Add the map as a taxonomy term for associating with map_features |
| tripal_featuremap_admin |
tripal_featuremap/ |
Administrative settings form |
| tripal_featuremap_admin_validate |
tripal_featuremap/ |
|
| tripal_featuremap_cleanup |
tripal_featuremap/ |
Remove orphaned drupal nodes |
| tripal_featuremap_cron |
tripal_featuremap/ |
|
| tripal_featuremap_get_schemas |
tripal_featuremap/ |
This function simply defines all tables needed for the module to work correctly. By putting the table definitions in a separate function we can easily provide the entire list for hook_install or individual tables for an update. |
| tripal_featuremap_help |
tripal_featuremap/ |
Display help and module information |
| tripal_featuremap_init |
tripal_featuremap/ |
|
| tripal_featuremap_install |
tripal_featuremap/ |
Implementation of hook_install(). |
| tripal_featuremap_map_access |
tripal_featuremap/ |
Implement hook_access(). |
| tripal_featuremap_menu |
tripal_featuremap/ |
Menu items are automatically added for the new node types created by this module to the 'Create Content' Navigation menu item. This function adds more menu items needed for this module. |
| tripal_featuremap_nodeapi |
tripal_featuremap/ |
Implementation of hook_nodeapi(). Display map information for associated features or organisms This function also provides contents for indexing |
| tripal_featuremap_node_info |
tripal_featuremap/ |
Provide information to drupal about the node types that we're creating in this module |
| tripal_featuremap_perm |
tripal_featuremap/ |
Set the permission types that the chado module uses. Essentially we want permissionis that protect creation, editing and deleting of chado data objects |
| tripal_featuremap_schema |
tripal_featuremap/ |
Implementation of hook_schema(). |
| tripal_featuremap_sync_featuremaps |
tripal_featuremap/ |
|
| tripal_featuremap_theme |
tripal_featuremap/ |
We need to let drupal know about our theme functions and their arguments. We create theme functions to allow users of the module to customize the look and feel of the output generated in this module |
| tripal_featuremap_uninstall |
tripal_featuremap/ |
Implementation of hook_uninstall(). |
| tripal_featuremap_views_api |
tripal_featuremap/ |
Implements hook_views_api() Purpose: Essentially this hook tells drupal that there is views support for for this module which then includes tripal_db.views.inc where all the views integration code is |