tripal_feature_phenotypes.tpl.php
- 2.x tripal_phenotype/theme/templates/tripal_feature_phenotypes.tpl.php
- 3.x legacy/tripal_phenotype/theme/templates/tripal_feature_phenotypes.tpl.php
1 theme call to tripal_feature_phenotypes.tpl.php
- tripal_phenotype_node_view in tripal_phenotype/
tripal_phenotype.module - Implements hook_node_view().
File
tripal_phenotype/theme/templates/tripal_feature_phenotypes.tpl.phpView source
- <?php
- // expand the feature object to include the phenotypes from the feature_phenotypes table in chado.
- $feature = $variables['node']->feature;
- $options = array(
- 'return_array' => 1,
- 'include_fk' => array(
- 'phenotype_id' => array(
- 'attr_id' => 1,
- 'cvalue_id' => 1,
- 'assay_id' => 1,
- 'observable_id' => 1,
- )
- )
- );
- $feature = chado_expand_var($feature, 'table', 'feature_phenotype', $options);
- $feature_phenotypes = $feature->feature_phenotype;
-
- if(count($feature_phenotypes) > 0){ ?>
-
- <div class="tripal_feature-data-block-desc tripal-data-block-desc">The feature is associated with the following phenotypes</div><?php
-
- // the $headers array is an array of fields to use as the colum headers.
- // additional documentation can be found here
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $headers = array('Attribute', 'Observed Unit', 'Value', 'Evidence Type');
-
- // the $rows array contains an array of rows where each row is an array
- // of values for each column of the table in that row. Additional documentation
- // can be found here:
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $rows = array();
-
- // iterate through the feature_phenotype records
- foreach ($feature_phenotypes as $feature_phenotype){
- $phenotype = $feature_phenotype->phenotype_id;
-
- // expand the text fields
- $options = array('return_array' => 1);
- $phenotype = chado_expand_var($phenotype, 'field', 'phenotype.value', $options);
- $phenotype = chado_expand_var($phenotype, 'field', 'phenotype.uniquename', $options);
- $phenotype = chado_expand_var($phenotype, 'field', 'phenotype.name', $options);
-
- // get the phenotype value. If the value is qualitative the cvalue_id will link to a type.
- // If quantitative we use the value column
- $phen_value = $phenotype->value . '<br>';
- if ($phenotype->cvalue_id) {
- $phen_value .= ucwords(preg_replace('/_/', ' ', $phenotype->cvalue_id->name)) . '<br>';
- }
-
- $phen_value = $phenotype->cvalue_id ? $phenotype->cvalue_id->name : $phenotype->value;
- $phenotype = $feature_phenotype->phenotype_id;
- $rows[] = array(
- $phenotype->attr_id->name,
- $phenotype->observable_id->name,
- $phen_value,
- $phenotype->assay_id->name
- );
- }
- // the $table array contains the headers and rows array as well as other
- // options for controlling the display of the table. Additional
- // documentation can be found here:
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $table = array(
- 'header' => $headers,
- 'rows' => $rows,
- 'attributes' => array(
- 'id' => 'tripal_feature-table-phenotypes',
- 'class' => 'tripal-data-table'
- ),
- 'sticky' => FALSE,
- 'caption' => '',
- 'colgroups' => array(),
- 'empty' => '',
- );
-
- // once we have our table array structure defined, we call Drupal's theme_table()
- // function to generate the table.
- print theme_table($table);
- }