tripal_stock_references.tpl.php
- 2.x tripal_stock/theme/templates/tripal_stock_references.tpl.php
- 3.x legacy/tripal_stock/theme/templates/tripal_stock_references.tpl.php
1 theme call to tripal_stock_references.tpl.php
- tripal_stock_node_view in tripal_stock/
includes/ tripal_stock.chado_node.inc - Implements hook_node_view(). Acts on all content types.
File
tripal_stock/theme/templates/tripal_stock_references.tpl.phpView source
- <?php
- $stock = $variables['node']->stock;
- $references = array();
-
- // First, get the dbxref record from stock record itself if one exists
- if ($stock->dbxref_id) {
- $stock->dbxref_id->is_primary = 1; // add this new property so we know it's the primary reference
- $references[] = $stock->dbxref_id;
- }
-
- // Second, expand the stock object to include the records from the stock_dbxref table
- $options = array('return_array' => 1);
- $stock = chado_expand_var($stock, 'table', 'stock_dbxref', $options);
- $stock_dbxrefs = $stock->stock_dbxref;
- if (count($stock_dbxrefs) > 0 ) {
- foreach ($stock_dbxrefs as $stock_dbxref) {
- if($stock_dbxref->dbxref_id->db_id->name == 'GFF_source'){
- // check to see if the reference 'GFF_source' is there. This reference is
- // used to if the Chado Perl GFF loader was used to load the stocks
- }
- else {
- $references[] = $stock_dbxref->dbxref_id;
- }
- }
- }
-
-
- if(count($references) > 0){ ?>
- <div class="tripal_stock-data-block-desc tripal-data-block-desc">External references for this <?php print $stock->type_id->name ?></div><?php
-
- // the $headers array is an array of fields to use as the colum headers.
- // additional documentation can be found here
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $headers = array('Database', 'Accession');
-
- // the $rows array contains an array of rows where each row is an array
- // of values for each column of the table in that row. Additional documentation
- // can be found here:
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $rows = array();
-
- foreach ($references as $dbxref){
-
- // skip the GFF_source entry as this is just needed for the GBrowse chado adapter
- if ($dbxref->db_id->name == 'GFF_source'){
- continue;
- }
- $dbname = $dbxref->db_id->name;
- if ($dbxref->db_id->url) {
- $dbname = l($dbname, $dbxref->db_id->url, array('attributes' => array('target' => '_blank')));
- }
-
- $accession = $dbxref->accession;
- if ($dbxref->db_id->urlprefix) {
- $accession = l($accession, $dbxref->db_id->urlprefix . $dbxref->accession, array('attributes' => array('target' => '_blank')));
- }
- if (property_exists($dbxref, 'is_primary')) {
- $accession .= " <i>(primary cross-reference)</i>";
- }
- $rows[] = array(
- $dbname,
- $accession
- );
- }
-
- // the $table array contains the headers and rows array as well as other
- // options for controlling the display of the table. Additional
- // documentation can be found here:
- // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
- $table = array(
- 'header' => $headers,
- 'rows' => $rows,
- 'attributes' => array(
- 'id' => 'tripal_stock-table-references',
- 'class' => 'tripal-data-table'
- ),
- 'sticky' => FALSE,
- 'caption' => '',
- 'colgroups' => array(),
- 'empty' => '',
- );
-
- // once we have our table array structure defined, we call Drupal's theme_table()
- // function to generate the table.
- print theme_table($table);
- }?>
-
-