Stock Module
- 2.x tripal_stock/tripal_stock.module tripal_stock
- 1.x tripal_stock/tripal_stock.module tripal_stock
Integrates the Chado Stock module with Drupal Nodes & Views
The Tripal Stock Module provides functionality for adding, editing, deleting and accessing chado stocks. The stock module was designed to store information about stock collections in a laboratory. What is called a stock could also be called a strain or an accession. There is a lot in common between a Drosophila stock and a Saccharomyces strain and an Arabidopsis line. They all come from some taxon, have genotypes, physical locations in the lab, some conceivable relationship with a publication, some conceivable relationship with a sequence feature (such as a transgene), and could be described by some ontology term. For more information about the chado Stock Module see the GMOD Wiki Page (http://gmod.org/wiki/Chado_Stock_Module)
File
- tripal_stock/
tripal_stock.module, line 15 - Basic functionality for stocks
Functions
Name |
Location | Description |
|---|---|---|
| chado_stock_chado_node_sync_create_new_node |
tripal_stock/ |
Used by Tripal Chado Node API during sync'ing of nodes |
| chado_stock_delete |
tripal_stock/ |
Implements hook_delete(). Handles deleting of chado_stocks |
| chado_stock_form |
tripal_stock/ |
Implements hook_form(). Creates the main Add/Edit/Delete Form for chado stocks |
| chado_stock_insert |
tripal_stock/ |
Implements hook_insert(). Inserts data from chado_stock_form() into drupal and chado |
| chado_stock_load |
tripal_stock/ |
Implements hook_load(). |
| chado_stock_update |
tripal_stock/ |
Implements hook_update(). Handles Editing/Updating of main stock info |
| chado_stock_validate |
tripal_stock/ |
Implements hook_validate(). Validate the input from the chado_stock node form |
| cs_node_load |
tripal_stock/ |
Implements Menu wildcard_load hook |
| tripal_stock_add_organism_count_mview |
tripal_stock/ |
Creates a materialized view that stores the type & number of stocks per organism |
| tripal_stock_admin |
tripal_stock/ |
Provide administration options for chado_stocks |
| tripal_stock_admin_stock_view |
tripal_stock/ |
Admin launchpad |
| tripal_stock_admin_validate |
tripal_stock/ |
Implements hook_form_validate(): Validates user input |
| tripal_stock_defaultvalue_user_stocks |
tripal_stock/ |
Defines the stock user search default view. |
| tripal_stock_defaultview_admin_stocks |
tripal_stock/ |
Default stock administration view |
| tripal_stock_disable |
tripal_stock/ |
Implements hook_disable(). Disable default views when module is disabled |
| tripal_stock_form_alter |
tripal_stock/ |
Implementation of hook_form_alter(). |
| tripal_stock_help |
tripal_stock/ |
Implements hook_help(). Adds a help page to the module list |
| tripal_stock_install |
tripal_stock/ |
Implementation of hook_install(). |
| tripal_stock_load_organism_stock_counts |
tripal_stock/ |
Load the arguments for the organism stock counts browser |
| tripal_stock_menu |
tripal_stock/ |
Implements hook_menu(). Adds menu items for the tripal_stock |
| tripal_stock_node_access |
tripal_stock/ |
Implement hook_node_access(). |
| tripal_stock_node_info |
tripal_stock/ |
Implements hook_node_info(). Registers a stock node type |
| tripal_stock_node_insert |
tripal_stock/ |
Implements hook_node_insert(). Acts on all content types. |
| tripal_stock_node_presave |
tripal_stock/ |
Implements hook_node_presave(). Acts on all content types. |
| tripal_stock_node_update |
tripal_stock/ |
Implements hook_node_update(). Acts on all content types. |
| tripal_stock_node_view |
tripal_stock/ |
Implements hook_node_view(). Acts on all content types. |
| tripal_stock_permission |
tripal_stock/ |
Implements hook_permission(). Set the permission types that the chado stock module uses |
| tripal_stock_preprocess_tripal_stock_relationships |
tripal_stock/ |
Implements hook_preprocess_tripal_stock_relationships() which is the preprocess hook for the tripal_stock_relationships template |
| tripal_stock_requirements |
tripal_stock/ |
Implementation of hook_requirements(). |
| tripal_stock_schema |
tripal_stock/ |
Implementation of hook_schema(). |
| tripal_stock_theme |
tripal_stock/ |
Implements hook_theme(). Register themeing functions for this module |
| tripal_stock_uninstall |
tripal_stock/ |
Implementation of hook_uninstall(). |
| tripal_stock_views_api |
tripal_stock/ |
Implements hook_views_api(). |
| tripal_stock_views_default_views |
tripal_stock/ |
Implements hook_views_default_views(). |