56 uses of TRIPAL_WARNING
- chado_add_node_form_dbxrefs in legacy/
tripal_core/ api/ tripal_core.chado_nodes.dbxrefs.api.inc - Provides a form for adding to BASE_dbxref and dbxref tables
- chado_add_node_form_properties in legacy/
tripal_core/ api/ tripal_core.chado_nodes.properties.api.inc - chado_add_node_form_relationships in legacy/
tripal_core/ api/ tripal_core.chado_nodes.relationships.api.inc - Provides a form for adding to BASE_relationship and relationship tables
- chado_associate_cvterm in tripal_chado/
api/ modules/ tripal_chado.cv.api.inc - Add a record to a cvterm linking table (ie: feature_cvterm).
- chado_associate_dbxref in tripal_chado/
api/ modules/ tripal_chado.db.api.inc - Add a record to a database reference linking table (ie: feature_dbxref).
- chado_delete_record in tripal_chado/
api/ tripal_chado.query.api.inc - Provides a generic function for deleting a record(s) from any chado table.
- chado_expand_var in tripal_chado/
api/ tripal_chado.variables.api.inc - Retrieves fields, or tables that were excluded by default from a variable.
- chado_featuremap_insert in legacy/
tripal_featuremap/ includes/ tripal_featuremap.chado_node.inc - Implements hook_insert().
- chado_feature_add_synonyms in legacy/
tripal_feature/ includes/ tripal_feature.chado_node.inc - Add synonyms to a feature
- chado_feature_insert in legacy/
tripal_feature/ includes/ tripal_feature.chado_node.inc - Implements hook_insert().
- chado_feature_update in legacy/
tripal_feature/ includes/ tripal_feature.chado_node.inc - Implements hook_update().
- chado_get_token_value in legacy/
tripal_core/ api/ tripal_core.chado_nodes.title_and_path.inc - Retrieve the value of the token from the node based on the $token_info['location']
- chado_insert_cv in tripal_chado/
api/ modules/ tripal_chado.cv.api.inc - Adds a controlled vocabulary to the CV table of Chado.
- chado_insert_cvterm in tripal_chado/
api/ modules/ tripal_chado.cv.api.inc - Add's a controlled vocabulary term to Chado.
- chado_insert_db in tripal_chado/
api/ modules/ tripal_chado.db.api.inc - Adds a new database to the Chado DB table and returns the DB object.
- chado_insert_dbxref in tripal_chado/
api/ modules/ tripal_chado.db.api.inc - Add a database reference.
- chado_insert_phylotree in tripal_chado/
api/ modules/ tripal_chado.phylotree.api.inc - Inserts a phylotree record into Chado.
- chado_insert_record in tripal_chado/
api/ tripal_chado.query.api.inc - Provides a generic routine for inserting into any Chado table
- chado_organism_validate in legacy/
tripal_organism/ includes/ tripal_organism.chado_node.inc - Implementation of hook_validate().
- chado_phylotree_insert in legacy/
tripal_phylogeny/ includes/ tripal_phylogeny.chado_node.inc - Implements hook_insert().
- chado_phylotree_update in legacy/
tripal_phylogeny/ includes/ tripal_phylogeny.chado_node.inc - Implements hook_update().
- chado_replace_tokens in tripal_chado/
api/ tripal_chado.api.inc - Replace all Chado Tokens in a given string.
- chado_select_record in tripal_chado/
api/ tripal_chado.query.api.inc - Provides a generic routine for selecting data from a Chado table.
- chado_set_node_url in legacy/
tripal_core/ api/ tripal_core.chado_nodes.title_and_path.inc - Set the URL for a given node.
- chado_stock_insert in legacy/
tripal_stock/ includes/ tripal_stock.chado_node.inc - Implements hook_insert(). Inserts data from chado_stock_form() into drupal and chado
- chado_stock_update in legacy/
tripal_stock/ includes/ tripal_stock.chado_node.inc - Implements hook_update(). Handles Editing/Updating of main stock info
- chado_update_existing_node_urls in legacy/
tripal_core/ api/ tripal_core.chado_nodes.title_and_path.inc - Tripal Job for updating all node URLs for a particular node type.
- chado_update_phylotree in tripal_chado/
api/ modules/ tripal_chado.phylotree.api.inc - Updates a phylotree record into Chado.
- FASTAImporter::loadFasta in tripal_chado/
includes/ TripalImporter/ FASTAImporter.inc - Load a fasta file.
- FASTAImporter::loadFastaFeature in tripal_chado/
includes/ TripalImporter/ FASTAImporter.inc - A helper function for loadFasta() to load a single feature
- GFF3Importer::loadAlias in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Load any aliases for a feature
- GFF3Importer::loadDbxref in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Load the dbxref attribute for a feature
- GFF3Importer::loadDerivesFrom in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Load the derives from attribute for a gff3 feature
- GFF3Importer::loadFasta in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Load the FASTA sequences at the bottom of a GFF3 file
- GFF3Importer::loadFeature in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Create the feature record & link it to it's analysis
- GFF3Importer::loadFeatureLoc in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Insert the location of the feature
- GFF3Importer::loadOntology in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Load the cvterms for a feature.
- GFF3Importer::loadParents in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Load the parents for a gff3 feature
- GFF3Importer::loadProperty in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Load a preoprty (featurepop) for the feature
- GFF3Importer::loadTarget in tripal_chado/
includes/ TripalImporter/ GFF3Importer.inc - Load the target attribute of a gff3 record
- OBOImporter::loadOBO_v1_2 in tripal_chado/
includes/ TripalImporter/ OBOImporter.inc - Imports a given OBO file into Chado. This function is usually called by one of three wrapper functions: loadOBO_v1_2_id, loadOBO_v1_2_file or tirpal_cv_load_obo_v1_2_url. But, it can be called directly if the full path to an OBO file is available on…
- process_data_array_for_line in tripal_bulk_loader/
includes/ tripal_bulk_loader.loader.inc - Process the data array for a given line
- TripalEntityController::setAlias in tripal/
includes/ TripalEntityController.inc - Sets the URL alias for an entity.
- TripalImporter::logMessage in tripal/
includes/ TripalImporter.inc - Logs a message for the importer.
- tripal_add_views_integration in tripal_chado_views/
api/ tripal_chado_views.api.inc - Add views integration records into the tripal_views* tables.
- tripal_chado_migrate_form in tripal_chado/
includes/ tripal_chado.migrate.inc - Implements hook_form()
- tripal_chado_views_views_data in tripal_chado_views/
tripal_chado_views.views.inc - Implements hook_views_data().
- tripal_feature_analysis_delete_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_get_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_insert_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_feature_analysis_update_property in legacy/
tripal_feature/ api/ tripal_feature.DEPRECATED.inc - tripal_field_formatter_view in tripal/
includes/ tripal.fields.inc - Implements hook_field_formatter_view().
- tripal_get_cvterm_default_select_options in legacy/
tripal_cv/ api/ tripal_cv.api.inc - Create an options array to be used in a form element which provides a list of all chado cvterms. Unlike the tripal_get_cvterm_select_option, this function retreives the cvterms using the default vocabulary set for a given table and field. It will…
- tripal_report_error in tripal/
api/ tripal.notice.api.inc - Provide better error notice for Tripal.
- tripal_set_default_cv in legacy/
tripal_cv/ api/ tripal_cv.api.inc - This function sets the default vocabulary for a given table and field.
- tripal_set_message in tripal/
api/ tripal.notice.api.inc - Display messages to tripal administrators.