ChadoField.inc in tripal_chado/includes/TripalFields/ChadoField.inc

data__protein_sequence.inc in tripal_chado/includes/TripalFields/data__protein_sequence/data__protein_sequence.inc

data__sequence.inc in tripal_chado/includes/TripalFields/data__sequence/data__sequence.inc

TripalField.inc in tripal/includes/TripalFields/TripalField.inc

tripal_get_field_field_formatters in tripal/api/tripal.fields.api.inc

Retrieves a list of field formatters compatible with a given field.

class TripalTabDownloader extends TripalFieldDownloader {
  /**
   * Sets the label shown to the user describing this formatter.  It
   * should be a short identifier. Use the $full_label for a more
   * descriptive label.
   */
  static public $label = 'TAB';

  /**
   * A more verbose label that better describes the formatter.
   */
  static public $full_label = 'Tab delimeted';

  /**
   * Indicates the default extension for the outputfile.
   */
  static public $default_extension = 'txt';

  /**
   * @see TripalFieldDownloader::isFieldSupported()
   */
  public function isFieldSupported($field, $instance) {
    $is_supported = parent::isFieldSupported($field, $instance);

    // For now all fields are supported.
    return TRUE;
  }

  /**
   * @see TripalFieldDownloader::formatEntity()
   */
  protected function formatEntity($entity) {
    $bundle_name = $entity->bundle;
    $site = !property_exists($entity, 'site_id') ? 'local' : $entity->site_id;
    $col = array();

    // Iterate through all of the printable fields and add the value to
    // the row.
    foreach ($this->printable_fields as $accession => $label) {

      // If this field is not present for this entity then add an empty
      // element and move on.
      if (!array_key_exists($accession, $this->fields2terms[$site][$bundle_name]['by_accession'])) {
        $col[] = '';
        continue;
      }

      // Get the field from the class variables.
      $field_id = $this->fields2terms[$site][$bundle_name]['by_accession'][$accession];
      $field = $this->fields[$site][$bundle_name][$field_id]['field'];
      $instance = $this->fields[$site][$bundle_name][$field_id]['instance'];
      $field_name = $field['field_name'];

      // If we only have one item for this value then add it.
      if (count($entity->{$field_name}['und']) == 1) {
        $value = $entity->{$field_name}['und'][0]['value'];

        // If the single element is not an array then this is good.
        if (!is_array($value)) {
          $col[] = $value;
        }
        else {
          if (array_key_exists('rdfs:label', $value)) {
            $label = $entity->{$field_name}['und'][0]['value']['rdfs:label'];
            $col[] = strip_tags($label);
          }
          elseif (array_key_exists('schema:description', $value)) {
            $label = $entity->{$field_name}['und'][0]['value']['schema:description'];
            $col[] = strip_tags($label);
          }
          else {
            $col[] = '';
          }
          // TODO: What to do with fields that are arrays?
        }
      }
      // If we have multiple items then deal with that.
      else {
        $col[] = '';
        // TODO: What to do with fields that have multiple values?
      }
    }
    return array(implode("\t", $col));
  }

  /**
   * @see TripalFieldDownloader::getHeader()
   */
  protected function getHeader() {
    $row = array();
    foreach ($this->printable_fields as $accession => $label) {
      $row[] = $label;
    }
    return array(implode("\t", $row));
  }
}