Tripal Bulk Loader Module
- 2.x tripal_bulk_loader/tripal_bulk_loader.module tripal_bulk_loader
- 3.x tripal_bulk_loader/tripal_bulk_loader.module tripal_bulk_loader
- 1.x tripal_bulk_loader/tripal_bulk_loader.module tripal_bulk_loader
Functions implementing the Tripal Generic tab-delimited chado data loader
File
- tripal_bulk_loader/
tripal_bulk_loader.module, line 9 - Provides general functions for the tripal bulk loader.
Functions
Name |
Location | Description |
|---|---|---|
| drush_tripal_bulk_loader_tripal_loader_cancel |
tripal_bulk_loader/ |
Cancels the specified bulk loading job. |
| drush_tripal_bulk_loader_tripal_loader_progress |
tripal_bulk_loader/ |
Code ran for the tripal-loader-progress drush command Display the progress of any running tripal bulk loading job. |
| drush_tripal_bulk_loader_tripal_loader_revert |
tripal_bulk_loader/ |
Revert the records loaded by the last run of the specified loading job. This is only available if the specified loading job is keeping track of inserted IDs. |
| drush_tripal_bulk_loader_tripal_loader_submit |
tripal_bulk_loader/ |
Submit or Re-submit the given bulk loading job. |
| drush_tripal_bulk_loader_tripal_loader_view |
tripal_bulk_loader/ |
Returns the status/details of the specified bulk loading job. |
| process_data_array_for_line |
tripal_bulk_loader/ |
Process the data array for a given line |
| tblid_load |
tripal_bulk_loader/ |
Implements hook_load() for the menu system. |
| tblid_to_arg |
tripal_bulk_loader/ |
Implements hook_to_arg(). Ensures the arguement for the bulk loader templates path is correct |
| tripal_bulk_loader_add_foreignkey_to_values |
tripal_bulk_loader/ |
Handles foreign keys in the values array. |
| tripal_bulk_loader_add_loader_job_form |
tripal_bulk_loader/ |
Add Loader Job Form |
| tripal_bulk_loader_add_loader_job_form_submit |
tripal_bulk_loader/ |
Add Loader Job Form (Submit) |
| tripal_bulk_loader_add_spreadsheetdata_to_values |
tripal_bulk_loader/ |
This function adds the file data to the values array |
| tripal_bulk_loader_admin_jobs_listing |
tripal_bulk_loader/ |
Landing page for bulk loader admin. Ensures views are enabled and if not provides links to do so. |
| tripal_bulk_loader_coder_ignore |
tripal_bulk_loader/ |
Implements hook_coder_ignore(). Defines the path to the file (tripal_bulk_loader.coder_ignores.txt) where ignore rules for coder are stored |
| tripal_bulk_loader_configuration_form |
tripal_bulk_loader/ |
A Configuration form for this module |
| tripal_bulk_loader_configuration_form_submit |
tripal_bulk_loader/ |
A Configuration form for this module (Submit) |
| tripal_bulk_loader_defaultview_admin_job_listing |
tripal_bulk_loader/ |
Default Admin View for job management |
| tripal_bulk_loader_defaultview_admin_template_listing |
tripal_bulk_loader/ |
Default Admin View for template management |
| tripal_bulk_loader_delete |
tripal_bulk_loader/ |
Implements hook_delete(). Deletes the data when the delete button on the node form is clicked |
| tripal_bulk_loader_delete_constant_set_form |
tripal_bulk_loader/ |
Delete a constant set (exposed fields in template) |
| tripal_bulk_loader_delete_constant_set_form_submit |
tripal_bulk_loader/ |
Delete the current constant set |
| tripal_bulk_loader_delete_template_base_form |
tripal_bulk_loader/ |
Delete Template Form This form allows admin to delete already existing templates |
| tripal_bulk_loader_delete_template_base_form_submit |
tripal_bulk_loader/ |
Delete Template Form Submit |
| tripal_bulk_loader_delete_template_field_form |
tripal_bulk_loader/ |
Delete Field Form |
| tripal_bulk_loader_delete_template_field_form_submit |
tripal_bulk_loader/ |
Delete Field Form |
| tripal_bulk_loader_delete_template_record_form |
tripal_bulk_loader/ |
Delete Record Form |
| tripal_bulk_loader_delete_template_record_form_submit |
tripal_bulk_loader/ |
Delete Record Form |
| tripal_bulk_loader_disable |
tripal_bulk_loader/ |
Implements hook_disable(). Disable default views when module is disabled |
| tripal_bulk_loader_drush_command |
tripal_bulk_loader/ |
Implements hook_drush_command(). |
| tripal_bulk_loader_duplicate_template_record_form |
tripal_bulk_loader/ |
Duplicate Record Form |
| tripal_bulk_loader_duplicate_template_record_form_submit |
tripal_bulk_loader/ |
Delete Record Form |
| tripal_bulk_loader_edit_constant_set_form |
tripal_bulk_loader/ |
Edit a constant set (exposed fields in template) |
| tripal_bulk_loader_edit_constant_set_form_submit |
tripal_bulk_loader/ |
Edit constants in the current constant set |
| tripal_bulk_loader_edit_template_record_form |
tripal_bulk_loader/ |
Edit Record Form |
| tripal_bulk_loader_edit_template_record_form_submit |
tripal_bulk_loader/ |
Edit Record Form Submit |
| tripal_bulk_loader_edit_template_record_form_validate |
tripal_bulk_loader/ |
Implements hook_form_validate() |
| tripal_bulk_loader_export_template_form |
tripal_bulk_loader/ |
Export Template Form |
| tripal_bulk_loader_finish_loading |
tripal_bulk_loader/ |
Finishes the loading job by setting variables and exiting. |
| tripal_bulk_loader_flatten_array |
tripal_bulk_loader/ |
Flattens an array up to two levels Used for printing of arrays without taking up much space |
| tripal_bulk_loader_form |
tripal_bulk_loader/ |
Implements hook_form(). Used to gather the extra details stored with a Bulk Loading Job Node |
| tripal_bulk_loader_has_exposed_fields |
tripal_bulk_loader/ |
Check if a bulk loading job has exposed constants |
| tripal_bulk_loader_import_template_form |
tripal_bulk_loader/ |
Import Template Form |
| tripal_bulk_loader_import_template_form_submit |
tripal_bulk_loader/ |
Import Template Form Submit |
| tripal_bulk_loader_init |
tripal_bulk_loader/ |
Implements hook_init(). Used to add stylesheets and javascript files to the header |
| tripal_bulk_loader_insert |
tripal_bulk_loader/ |
Implements hook_insert(). Insert the data from the node form on Create content |
| tripal_bulk_loader_job_describe_args |
tripal_bulk_loader/ |
Implements hook_job_describe_args() Specifically to make viewing past tripal jobs more readable for jobs registered by this module |
| tripal_bulk_loader_load |
tripal_bulk_loader/ |
Implements hook_load(). |
| tripal_bulk_loader_load_data |
tripal_bulk_loader/ |
Tripal Bulk Loader |
| tripal_bulk_loader_menu |
tripal_bulk_loader/ |
Implements hook_menu(). |
| tripal_bulk_loader_modify_template_base_form |
tripal_bulk_loader/ |
The main form reached at admin/tripal/tripal_bulk_loader/create and /edit |
| tripal_bulk_loader_modify_template_base_form_submit |
tripal_bulk_loader/ |
Submit for tripal_bulk_loader_modify_template_base_form |
| tripal_bulk_loader_node_access |
tripal_bulk_loader/ |
Implement hook_access(). |
| tripal_bulk_loader_node_info |
tripal_bulk_loader/ |
Implements hook_node_info(). |
| tripal_bulk_loader_node_presave |
tripal_bulk_loader/ |
Implements hook_node_presave(). Acts on all node types. |
| tripal_bulk_loader_permission |
tripal_bulk_loader/ |
Implements hook_permission(). |
| tripal_bulk_loader_preprocess_tripal_bulk_loader_template |
tripal_bulk_loader/ |
Preprocessor function for the tripal_bulk_loader template |
| tripal_bulk_loader_progess_file_get_progress |
tripal_bulk_loader/ |
Get the progress of the current constant set from the progress file |
| tripal_bulk_loader_progress_bar |
tripal_bulk_loader/ |
Used to display loader progress to the user |
| tripal_bulk_loader_progress_file_track_job |
tripal_bulk_loader/ |
Keep track of progress in file rather then database |
| tripal_bulk_loader_regex_tranform_values |
tripal_bulk_loader/ |
Uses a supplied regex to transform spreadsheet values |
| tripal_bulk_loader_requirements |
tripal_bulk_loader/ |
Implementation of hook_requirements(). |
| tripal_bulk_loader_schema |
tripal_bulk_loader/ |
Implements hook_schema(). |
| tripal_bulk_loader_set_constants_form |
tripal_bulk_loader/ |
Set constants (exposed fields in template) |
| tripal_bulk_loader_set_constants_form_submit |
tripal_bulk_loader/ |
Insert/update the constants associated with this node |
| tripal_bulk_loader_set_constants_form_validate |
tripal_bulk_loader/ |
Validate that the values entered exist in the database if indicated in hte template array |
| tripal_bulk_loader_template_fields_ahah |
tripal_bulk_loader/ |
AHAH Function: Replace $form['fields'] in tripal_bulk_loader_add_template_field_form |
| tripal_bulk_loader_template_field_form |
tripal_bulk_loader/ |
Add Field Form |
| tripal_bulk_loader_template_field_form_default_values |
tripal_bulk_loader/ |
Determine default values needed for add/edit field form |
| tripal_bulk_loader_template_field_form_submit |
tripal_bulk_loader/ |
Add Field Submit |
| tripal_bulk_loader_template_field_form_validate |
tripal_bulk_loader/ |
Implements hook_form_validate(). |
| tripal_bulk_loader_theme |
tripal_bulk_loader/ |
Implements hook_theme(). |
| tripal_bulk_loader_throw_error |
tripal_bulk_loader/ |
Used to throw a hopefully human-readable error. |
| tripal_bulk_loader_update |
tripal_bulk_loader/ |
Implements hook_update(). Updates the data submitted by the node form on edit |
| tripal_bulk_loader_update_6150 |
tripal_bulk_loader/ |
Implements hook_update_N(). |
| tripal_bulk_loader_update_6151 |
tripal_bulk_loader/ |
Implements hook_update_N(). |
| tripal_bulk_loader_update_6152 |
tripal_bulk_loader/ |
Implements hook_update_N(). |
| tripal_bulk_loader_update_constant |
tripal_bulk_loader/ |
Inserts/Updates a tripal bulk loading job constant |
| tripal_bulk_loader_views_api |
tripal_bulk_loader/ |
Implements hook_views_api(). |
| tripal_bulk_loader_views_data |
tripal_bulk_loader/ |
Generates a dynamic data array for Views |
| tripal_bulk_loader_views_default_views |
tripal_bulk_loader/ |
Implements hook_views_default_views(). |
Files
|
Name |
Location | Description |
|---|---|---|
| tripal_bulk_loader.admin.inc |
tripal_bulk_loader/ |
Bulk Loader Administration (Miscellaneous) |
| tripal_bulk_loader.admin.templates.inc |
tripal_bulk_loader/ |
All functions in this file pertain to administrative management of bulk loader templates |
| tripal_bulk_loader.api.templates.inc |
tripal_bulk_loader/ |
Provides functions for hooking into bulk loader functionality. |
| tripal_bulk_loader.chado_node.inc |
tripal_bulk_loader/ |
Tripal Bulk Loader Node functionality (jobs). |
| tripal_bulk_loader.constants.inc |
tripal_bulk_loader/ |
Manages the constants form added to the tripal bulk loader node form |
| tripal_bulk_loader.drush.inc |
tripal_bulk_loader/ |
Implements drush integration for this module |
| tripal_bulk_loader.install |
tripal_bulk_loader/ |
Install/Uninstalls, Enables/Disables this module. |
| tripal_bulk_loader.loader.inc |
tripal_bulk_loader/ |
Handles the actual loading of data. |
| tripal_bulk_loader.module |
tripal_bulk_loader/ |
Provides general functions for the tripal bulk loader. |
| tripal_bulk_loader.views.inc |
tripal_bulk_loader/ |
Provides Drupal views integration excluding default views. |
| tripal_bulk_loader.views_default.inc |
tripal_bulk_loader/ |
Defines the tripal bulk loader default views. |