Imports publications into Chado

Related topics

File

tripal_chado/tripal_chado.drush.inc, line 128

Contains function relating to drush-integration of this module.

Code

function drush_tripal_chado_trp_import_pubs() {
  $create_contacts = drush_get_option('create_contacts');
  $dbxref = drush_get_option('dbxref');
  $do_report = drush_get_option('report');
  $update = drush_get_option('update');
  $uname = drush_get_option('username');

  drush_tripal_set_user($uname);

  if ($update == 'Y') {
    $update = TRUE;
  }
  else {
    $update = FALSE;
  }

  module_load_include('inc', 'tripal_chado', 'includes/loaders/tripal_chado.pub_importers');
  if ($dbxref) {
    chado_import_pub_by_dbxref($dbxref, $create_contacts, $update);
  }
  else {
    chado_execute_active_pub_importers($do_report, $update);
  }
}