Add the OBO to the tripal_cv_obo table in the Drupal database.

If the OBO name already exists in the table then the path is updated.

Parameters

$name: The human readable name of this ontology

$path: The file path or URL of the ontology

Return value

Returns the ontology ID

Related topics

File

tripal_cv/api/tripal_cv.api.inc, line 856

This module provides a set of functions to simplify working with controlled vocabularies.

Code

function tripal_insert_obo($name, $path) {
  // make sure an OBO with the same name doesn't already exist
  $obo_id = db_select('tripal_cv_obo', 'tco')
    ->fields('tco', array('obo_id'))
    ->condition('name', $name)
    ->execute()
    ->fetchField();

  if ($obo_id) {
    db_update('tripal_cv_obo')
      ->fields(array(
        'path' => $path,
      ))
      ->condition('name', $name)
      ->execute();
    return $obo_id;
  }
  else {
    $obo_id = db_insert('tripal_cv_obo')
      ->fields(array(
        'name' => $name,
        'path' => $path,
      ))
      ->execute();
    return $obo_id;
  }
}