File

tripal_feature/includes/tripal_feature.sync_features.inc, line 38

@todo Add file header description

Code

function tripal_feature_sync_form() {

  $form['description'] = array(
    '#type' => 'item',
    '#value' => t("Add feature types, optionally select an organism and " .
      "click the 'Sync all Features' button to create Drupal " .
      "content for features in chado. Only features of the types listed " .
      "below in the Feature Types box will be synced. You may limit the " .
      "features to be synced by a specific organism. Depending on the " .
      "number of features in the chado database this may take a long " .
      "time to complete. "),
  );

  $form['feature_types'] = array(
    '#title' => t('Feature Types'),
    '#type' => 'textarea',
    '#description' => t("Enter the names of the feature types to sync.  Pages for these feature " .
      "types will be created automatically for features that exist in the " .
      "chado database.  The names listed here should be spearated by " .
      "spaces or entered separately on new lines. The names must match " .
      "exactly (spelling and case) with terms in the sequence ontology"),
    '#required' => TRUE,
    '#default_value' => variable_get('chado_sync_feature_types', 'gene contig'),
  );

  // get the list of organisms
  $sql = "SELECT * FROM {organism} ORDER BY genus, species";
  $orgs = tripal_organism_get_synced();
  $organisms[] = '';
  foreach ($orgs as $organism) {
    $organisms[$organism->organism_id] = "$organism->genus $organism->species ($organism->common_name)";
  }
  $form['organism_id'] = array(
    '#title' => t('Organism'),
    '#type' => t('select'),
    '#description' => t("Choose the organism for which features types set above will be synced. Only organisms which also have been synced will appear in this list."),
    '#options' => $organisms,
  );


  $form['button'] = array(
    '#type' => 'submit',
    '#value' => t('Sync all Features'),
    '#weight' => 3,
  );

  return $form;
}