Executes jobs in the Tripal Jobs Queue

NOTE: The following code is executed when drush 'trpjob-run' or 'drush tripal-launch-jobs' is called

File

tripal_feature/tripal_feature.drush.inc, line 70

Contains function relating to drush-integration of this module.

Code

function drush_tripal_feature_tripal_get_sequence() {

  $org_commonname = drush_get_option('org');
  $genus = drush_get_option('genus');
  $species = drush_get_option('species');
  $analysis_name = drush_get_option('analysis');
  $type = drush_get_option('type');
  $feature_name = drush_get_option('name');
  $upstream = drush_get_option('up');
  $downstream = drush_get_option('down');
  $output_format = drush_get_option('out');
  $derive_from_parent = drush_get_option('parent');
  $aggregate = drush_get_option('agg');
  $child = drush_get_option('child');
  $relationship = drush_get_option('relationship');
  $rel_part = drush_get_option('rel_part');

  if ($relationship and !$rel_part) {
    print "Please specify both 'relationship' and a 'rel_part' arguments. Both must be used together\n";
    return;
  }

  tripal_feature_seq_extract_get_features($org_commonname, $genus, $species, $analysis_name, 
  $type, $feature_name, $upstream, $downstream, $output_format, $derive_from_parent, 
  $aggregate, $child, $relationship, $rel_part);
}