|
chado_feature_access |
tripal_feature/tripal_feature.module |
Implement hook_access(). |
|
chado_feature_add_gbaccession |
tripal_feature/tripal_feature.module |
|
|
chado_feature_add_synonyms |
tripal_feature/tripal_feature.module |
|
|
chado_feature_delete |
tripal_feature/tripal_feature.module |
|
|
chado_feature_form |
tripal_feature/tripal_feature.module |
|
|
chado_feature_insert |
tripal_feature/tripal_feature.module |
When a new chado_feature node is created we also need to add information
to our chado_feature table. This function is called on insert of a new node
of type 'chado_feature' and inserts the necessary information. |
|
chado_feature_load |
tripal_feature/tripal_feature.module |
When a node is requested by the user this function is called to allow us
to add auxiliary data to the node object. |
|
chado_feature_update |
tripal_feature/tripal_feature.module |
|
|
chado_feature_validate |
tripal_feature/tripal_feature.module |
|
|
chado_feature_view |
tripal_feature/tripal_feature.module |
This function customizes the view of the chado_feature node. It allows
us to generate the markup. |
|
get_tripal_feature_admin_form_cleanup_set |
tripal_feature/includes/tripal_feature.admin.inc |
|
|
get_tripal_feature_admin_form_reindex_set |
tripal_feature/includes/tripal_feature.admin.inc |
|
|
get_tripal_feature_admin_form_taxonomy_set |
tripal_feature/includes/tripal_feature.admin.inc |
|
|
list_dbreferences_for_node |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
theme_tripal_feature_edit_ALL_db_references_form |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
theme_tripal_feature_edit_ALL_properties_form |
tripal_feature/includes/tripal_feature-properties.inc |
|
|
theme_tripal_feature_edit_ALL_relationships_form |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
theme_tripal_feature_search_index |
tripal_feature/includes/tripal_feature.admin.inc |
This function is an extension of the chado_feature_view by providing
the markup for the feature object THAT WILL BE INDEXED. |
|
theme_tripal_feature_search_results |
tripal_feature/includes/tripal_feature.admin.inc |
This function is an extension of the chado_feature_view by providing
the markup for the feature object THAT WILL BE INDEXED. |
|
tripal_analysis_block |
tripal_analysis/tripal_analysis.module |
|
|
tripal_features_cleanup |
tripal_feature/includes/tripal_feature.admin.inc |
Remove orphaned drupal nodes |
|
tripal_features_reindex |
tripal_feature/includes/indexFeatures.inc |
|
|
tripal_features_set_taxonomy |
tripal_feature/includes/tripal_feature.admin.inc |
|
|
tripal_feature_add_ALL_dbreferences_page |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
tripal_feature_add_ALL_relationships_page |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_add_ONE_dbreference_form |
tripal_feature/includes/tripal_feature-db_references.inc |
Implements Hook_form()
Handles adding of Database References to features |
|
tripal_feature_add_ONE_dbreference_form_submit |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
tripal_feature_add_ONE_dbreference_form_validate |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
tripal_feature_add_ONE_property_form |
tripal_feature/includes/tripal_feature-properties.inc |
|
|
tripal_feature_add_ONE_property_form_submit |
tripal_feature/includes/tripal_feature-properties.inc |
|
|
tripal_feature_add_ONE_property_form_validate |
tripal_feature/includes/tripal_feature-properties.inc |
|
|
tripal_feature_add_ONE_relationship_form |
tripal_feature/includes/tripal_feature-relationships.inc |
Implements Hook_form()
Handles adding of Relationships to Features |
|
tripal_feature_add_ONE_relationship_form_submit |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_add_ONE_relationship_form_validate |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_add_organism_count_mview |
tripal_feature/tripal_feature.install |
|
|
tripal_feature_admin |
tripal_feature/includes/tripal_feature.admin.inc |
|
|
tripal_feature_admin_validate |
tripal_feature/includes/tripal_feature.admin.inc |
|
|
tripal_feature_block |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_color_sequence |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_cv_chart |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_cv_tree |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_delete_db_reference |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
tripal_feature_delete_relationship |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_del_vocabulary |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_edit_ALL_dbreferences_page |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
tripal_feature_edit_ALL_db_references_form |
tripal_feature/includes/tripal_feature-db_references.inc |
Implements Hook_form()
Handles adding of DB References to Features |
|
tripal_feature_edit_ALL_db_references_form_submit |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
tripal_feature_edit_ALL_properties_form |
tripal_feature/includes/tripal_feature-properties.inc |
Implements Hook_form()
Handles adding of Properties for features |
|
tripal_feature_edit_ALL_properties_form_submit |
tripal_feature/includes/tripal_feature-properties.inc |
|
|
tripal_feature_edit_ALL_properties_page |
tripal_feature/includes/tripal_feature-properties.inc |
|
|
tripal_feature_edit_ALL_relationships_form |
tripal_feature/includes/tripal_feature-relationships.inc |
Implements Hook_form()
Handles adding of Properties & Synonyms to Stocks |
|
tripal_feature_edit_ALL_relationships_form_submit |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_edit_ALL_relationships_form_validate |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_edit_ALL_relationships_page |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_get_aggregate_relationships |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_get_custom_tables |
tripal_feature/api/tripal_feature.api.inc |
This function defines the custom tables that will be created
in the chado schema. |
|
tripal_feature_get_matched_alignments |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_get_schemas |
tripal_feature/tripal_feature.install |
This function simply defines all tables needed for the module to work
correctly. By putting the table definitions in a separate function we
can easily provide the entire list for hook_install or individual
tables for an update. |
|
tripal_feature_help |
tripal_feature/tripal_feature.module |
Display help and module information |
|
tripal_feature_implement_add_chado_properties_navigate |
tripal_feature/includes/tripal_feature-secondary_tables.inc |
|
|
tripal_feature_implement_add_chado_properties_navigate_submit |
tripal_feature/includes/tripal_feature-secondary_tables.inc |
|
|
tripal_feature_implement_add_chado_properties_progress |
tripal_feature/includes/tripal_feature-secondary_tables.inc |
|
|
tripal_feature_implement_back_to_feature_button |
tripal_feature/includes/tripal_feature-secondary_tables.inc |
|
|
tripal_feature_implement_back_to_feature_button_submit |
tripal_feature/includes/tripal_feature-secondary_tables.inc |
|
|
tripal_feature_index_feature |
tripal_feature/includes/indexFeatures.inc |
|
|
tripal_feature_init |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_install |
tripal_feature/tripal_feature.install |
Implementation of hook_install(). |
|
tripal_feature_is_obsolete_form |
tripal_feature/includes/tripal_feature-secondary_tables.inc |
Implements Hook_form()
Handles setting the is_obsolete property of stocks |
|
tripal_feature_is_obsolete_form_submit |
tripal_feature/includes/tripal_feature-secondary_tables.inc |
|
|
tripal_feature_job_describe_args |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_list_properties_for_node |
tripal_feature/includes/tripal_feature-properties.inc |
|
|
tripal_feature_list_relationships_for_node |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_load_analysis_feature_browser |
tripal_feature/tripal_feature.module |
This generates the Feature Browse which can optionally be included on library pages
and shows all features belonging to the given library. This Browse can be shown/hidden
on the Feature Configuration page. |
|
tripal_feature_load_featurelocs |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_load_featureloc_sequences |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_load_library_feature_browser |
tripal_feature/tripal_feature.module |
This generates the Feature Browser which can optionally be included on library pages
and shows all features belonging to the given library. This Browse can be shown/hidden
on the Feature Configuration page. |
|
tripal_feature_load_organism |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_load_organism_feature_browser |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_load_organism_feature_counts |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_load_properties |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_load_references |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_load_relationships |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_load_synonyms |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_menu |
tripal_feature/tripal_feature.module |
Menu items are automatically added for the new node types created
by this module to the 'Create Content' Navigation menu item. This function
adds more menu items needed for this module. |
|
tripal_feature_nodeapi |
tripal_feature/tripal_feature.module |
Display feature information for associated organisms. This function also
provides contents for indexing |
|
tripal_feature_node_info |
tripal_feature/tripal_feature.module |
Provide information to drupal about the node types that we're creating
in this module |
|
tripal_feature_perm |
tripal_feature/tripal_feature.module |
Set the permission types that the chado module uses. Essentially we
want permissionis that protect creation, editing and deleting of chado
data objects |
|
tripal_feature_preprocess_tripal_analysis_feature_browser |
tripal_feature/tripal_feature.module |
Preprocessor function for the Analysis Feature Browser |
|
tripal_feature_preprocess_tripal_feature_alignments |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_preprocess_tripal_feature_proteins |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_preprocess_tripal_feature_relationships |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_preprocess_tripal_library_feature_browser |
tripal_feature/tripal_feature.module |
Preprocessor function for the Library Feature Browser |
|
tripal_feature_preprocess_tripal_organism_feature_browser |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_preprocess_tripal_organism_feature_counts |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_return_fasta |
tripal_feature/tripal_feature.module |
|
|
tripal_feature_schema |
tripal_feature/tripal_feature.install |
Implementation of hook_schema(). |
|
tripal_feature_set_taxonomy |
tripal_feature/includes/tripal_feature.admin.inc |
|
|
tripal_feature_set_vocabulary |
tripal_feature/includes/tripal_feature.admin.inc |
|
|
tripal_feature_sort_locations |
tripal_feature/tripal_feature.module |
used to sort the feature locs by start position |
|
tripal_feature_sort_rel_objects |
tripal_feature/tripal_feature.module |
used to sort the list of relationship objects by start position |
|
tripal_feature_sort_rel_parts_by_end |
tripal_feature/tripal_feature.module |
used to sort the list of relationship parts by start position |
|
tripal_feature_sort_rel_parts_by_start |
tripal_feature/tripal_feature.module |
used to sort the list of relationship parts by start position |
|
tripal_feature_sync_feature |
tripal_feature/includes/tripal_feature.sync_features.inc |
|
|
tripal_feature_sync_features |
tripal_feature/includes/tripal_feature.sync_features.inc |
|
|
tripal_feature_theme |
tripal_feature/tripal_feature.module |
We need to let drupal know about our theme functions and their arguments.
We create theme functions to allow users of the module to customize the
look and feel of the output generated in this module |
|
tripal_feature_uninstall |
tripal_feature/tripal_feature.install |
Implementation of hook_uninstall(). |
|
tripal_feature_update_6000 |
tripal_feature/tripal_feature.install |
Update for Drupal 6.x, Tripal 0.2b, Feature Module 0.2
This update adjusts the materialized view by adding a 'cvterm_id' column |
|
tripal_feature_update_db_reference |
tripal_feature/includes/tripal_feature-db_references.inc |
|
|
tripal_feature_update_relationship |
tripal_feature/includes/tripal_feature-relationships.inc |
|
|
tripal_feature_views_api |
tripal_feature/tripal_feature.module |
Implements hook_views_api() |
