Related topics

File

tripal_library/includes/tripal_library.admin.inc, line 225

Code

function tripal_library_admin_validate($form, &$form_state) {
  global $user; // we need access to the user info
  $job_args = array();

  // Submit the Sync Job if selected
  if ($form_state['values']['op'] == t('Sync Libraries')) {

    // check to see if the user wants to sync chado and drupal.  If
    // so then we need to register a job to do so with tripal
    $libraries = $form_state['values']['libraries'];
    $do_all = FALSE;
    $to_sync = array();

    foreach ($libraries as $library_id) {
      if (preg_match("/^all$/i", $library_id)) {
        $do_all = TRUE;
      }
      if ($library_id and preg_match("/^\d+$/i", $library_id)) {
        // get the library info
        $sql = "SELECT * FROM {Library} WHERE library_id = %d";
        $library = db_fetch_object(chado_query($sql, $library_id));
        $to_sync[$library_id] = $library->name;
      }
    }

    // submit the job to the tripal job manager
    if ($do_all) {
      tripal_add_job('Sync all libraries', 'tripal_library', 'tripal_library_sync_libraries', $job_args, $user->uid);
    }
    else {
      foreach ($to_sync as $library_id => $name) {
        $job_args[0] = $library_id;
        tripal_add_job("Sync library: $name", 'tripal_library', 'tripal_library_sync_libraries', $job_args, $user->uid);
      }
    }
  }

  // -------------------------------------
  // Submit the Reindex Job if selected
  if ($form_state['values']['op'] == t('Reindex Features')) {
    $libraries = $form_state['values']['re-libraries'];
    foreach ($libraries as $library_id) {
      if ($library_id and preg_match("/^\d+$/i", $library_id)) {
        // get the library info
        $sql = "SELECT * FROM {Library} WHERE library_id = %d";
        $library = db_fetch_object(chado_query($sql, $library_id));
        $job_args[0] = $library_id;
        tripal_add_job("Reindex features for library: $library->name", 'tripal_library', 
        'tripal_library_reindex_features', $job_args, $user->uid);
      }
    }
  }

  // -------------------------------------
  // Submit the Taxonomy Job if selected
  if ($form_state['values']['op'] == t('Set Feature Taxonomy')) {
    $libraries = $form_state['values']['tx-libraries'];
    foreach ($libraries as $library_id) {
      if ($library_id and preg_match("/^\d+$/i", $library_id)) {
        // get the library info
        $sql = "SELECT * FROM {Library} WHERE library_id = %d";
        $library = db_fetch_object(chado_query($sql, $library_id));
        $job_args[0] = $library_id;
        tripal_add_job("Set taxonomy for features in library: $library->name", 'tripal_library', 
        'tripal_library_taxonify_features', $job_args, $user->uid);
      }
    }
  }
  // -------------------------------------
  // Submit the Cleanup Job if selected
  if ($form_state['values']['op'] == t('Clean up orphaned libraries')) {
    tripal_add_job('Cleanup orphaned libraries', 'tripal_library', 
    'tripal_library_cleanup', $job_args, $user->uid);
  }
}