function tripal_phylogeny_taxonomy_view
2.x tripal_phylogeny.taxonomy.inc | tripal_phylogeny_taxonomy_view() |
3.x tripal_phylogeny.taxonomy.inc | tripal_phylogeny_taxonomy_view() |
Generates a page that contains the taxonomy view.
1 string reference to 'tripal_phylogeny_taxonomy_view'
- tripal_phylogeny_menu in tripal_phylogeny/
tripal_phylogeny.module - Implements hook_menu().
File
- tripal_phylogeny/
includes/ tripal_phylogeny.taxonomy.inc, line 6
Code
function tripal_phylogeny_taxonomy_view() {
$values = array(
'type_id' => array(
'name' => 'taxonomy',
),
);
$message = t('Site administrators: This page is meant to provide
a heirarchical taxonomic tree for all of the organism present
in this site. This may not be useful if you only have a few
species. If so, you can turn off this page by disabling this page on
the site\'s <a href="@menu">Navigation Menu</a>. Otherwise, to generate the taxonomy go to this site\'s
<a href="@taxloader">NCBI taxonomy loader</a> to import the taxonomy information from NCBI.
<br><br>Note: If you add new species to this site, you should rerun the
NCBI taxonomy loader to update the view</p>',
array(
'@menu' => url('admin/structure/menu/manage/navigation'),
'@taxloader' => url('admin/tripal/loaders/ncbi_taxonomy_loader'
))
);
$admin_message = tripal_set_message($message, TRIPAL_INFO, array('return_html' => TRUE));
$phylotree = chado_generate_var('phylotree', $values);
if ($phylotree) {
$node = new stdClass();
$node->phylotree = $phylotree;
$html = theme('tripal_phylogeny_taxonomic_tree', array('node' => $node)) .
$admin_message;
return $html;
}
return array(
'#type' => 'markup',
'#markup' => t('This site has not yet prepared the taxonomy for viewing.') . $admin_message,
);
}