tripal_stock.api.inc
Provides an application programming interface (API) to manage stocks
File
tripal_stock/api/tripal_stock.api.incView source
- <?php
- /**
- * @file
- * Provides an application programming interface (API) to manage stocks
- */
-
- /**
- * @defgroup tripal_stock_api Stock Module API
- * @ingroup tripal_api
- * @{
- * Provides an application programming interface (API) to manage stocks
- * @}
- */
-
- /**
- * Retrieves a chado stock variable
- *
- * @param $identifier
- * An array with the key stating what the identifier is. Supported keys (only one of the
- * following unique keys is required):
- * - stock_id: the chado stock.stock_id primary key
- * - nid: the drupal nid of the stock
- * There are also some specially handled keys. They are:
- * - property: An array/object describing the property to select records for. It
- * should at least have either a type_name (if unique across cvs) or type_id. Other
- * supported keys include: cv_id/cv_name (of the type), value and rank
- * @param $options
- * An array of options. Supported keys include:
- * - Any keys supported by chado_generate_var(). See that function definition for
- * additional details.
- *
- * NOTE: the $identifier parameter can really be any array similar to $values passed into
- * chado_select_record(). It should fully specify the stock record to be returned.
- *
- * @return
- * If unique values were passed in as an identifier then an object describing the stock
- * will be returned (will be a chado variable from chado_generate_var()). Otherwise,
- * FALSE will be returned.
- *
- * @ingroup tripal_stock_api
- */
- function tripal_get_stock($identifiers, $options = array()) {
-
- // Set Defaults
- if (!isset($options['include_fk'])) {
- // Tells chado_generate_var to only expand 1 level
- $options['include_fk'] = array('type_id' => TRUE, 'dbxref_id' => TRUE);
- }
-
- // Error Checking of parameters
- if (!is_array($identifiers)) {
- tripal_report_error(
- 'tripal_stock_api',
- TRIPAL_ERROR,
- "tripal_get_stock: The identifier passed in is expected to be an array with the key
- matching a column name in the stock table (ie: stock_id or name). You passed in %identifier.",
- array(
- '%identifier'=> print_r($identifiers, TRUE)
- )
- );
- }
- elseif (empty($identifiers)) {
- tripal_report_error(
- 'tripal_stock_api',
- TRIPAL_ERROR,
- "tripal_get_stock: You did not pass in anything to identify the stock you want. The identifier
- is expected to be an array with the key matching a column name in the stock table
- (ie: stock_id or name). You passed in %identifier.",
- array(
- '%identifier'=> print_r($identifiers, TRUE)
- )
- );
- }
-
- // If one of the identifiers is property then use chado_get_record_with_property()
- if (isset($identifiers['property'])) {
- $property = $identifiers['property'];
- unset($identifiers['property']);
- $stock = chado_get_record_with_property(
- array('table' => 'stock', 'base_records' => $identifiers),
- array('type_name' => $property),
- $options
- );
- }
-
- // Else we have a simple case and we can just use chado_generate_var to get the stock
- else {
-
- // Try to get the stock
- $stock = chado_generate_var(
- 'stock',
- $identifiers,
- $options
- );
- }
-
- // Ensure the stock is singular. If it's an array then it is not singular
- if (is_array($stock)) {
- tripal_report_error(
- 'tripal_stock_api',
- TRIPAL_ERROR,
- "tripal_get_stock: The identifiers you passed in were not unique. You passed in %identifier.",
- array(
- '%identifier'=> print_r($identifiers, TRUE)
- )
- );
- }
-
- // Report an error if $stock is FALSE since then chado_generate_var has failed
- elseif ($stock === FALSE) {
- tripal_report_error(
- 'tripal_stock_api',
- TRIPAL_ERROR,
- "tripal_get_stock: chado_generate_var() failed to return a stock based on the identifiers
- you passed in. You should check that your identifiers are correct, as well as, look
- for a chado_generate_var error for additional clues. You passed in %identifier.",
- array(
- '%identifier'=> print_r($identifiers, TRUE)
- )
- );
- }
-
- // Else, as far we know, everything is fine so give them their stock :)
- else {
- return $stock;
- }
- }
-
- /**
- * Retrieves a chado stock variable
- *
- * @param $identifier
- * An array with the key stating what the identifier is. Supported keys include any
- * field in the stock table. See the chado_select_record() $values parameter for
- * additional details including an example.
- * @param $options
- * An array of options. Supported keys include:
- * - Any keys supported by chado_generate_var(). See that function definition for
- * additional details.
- *
- * @return
- * An array of stock objects matching the criteria.
- *
- * @ingroup tripal_stock_api
- */
- function tripal_get_multiple_stocks($identifiers, $options = array()) {
-
- // Set Defaults
- if (!isset($options['include_fk'])) {
- // Tells chado_generate_var to only expand 1 level
- $options['include_fk'] = array('type_id' => TRUE, 'dbxref_id' => TRUE);
- }
-
- // Error Checking of parameters
- if (!is_array($identifiers)) {
- tripal_report_error(
- 'tripal_stock_api',
- TRIPAL_ERROR,
- "tripal_get_stock: The identifier passed in is expected to be an array with the key
- matching a column name in the stock table (ie: stock_id or name). You passed in %identifier.",
- array(
- '%identifier'=> print_r($identifiers, TRUE)
- )
- );
- }
- elseif (empty($identifiers)) {
- tripal_report_error(
- 'tripal_stock_api',
- TRIPAL_ERROR,
- "tripal_get_stock: You did not pass in anything to identify the stock you want. The identifier
- is expected to be an array with the key matching a column name in the stock table
- (ie: stock_id or name). You passed in %identifier.",
- array(
- '%identifier'=> print_r($identifiers, TRUE)
- )
- );
- }
-
- // If one of the identifiers is property then use chado_get_record_with_property()
- if (isset($identifiers['property'])) {
- $property = $identifiers['property'];
- unset($identifiers['property']);
- $stock = chado_get_record_with_property(
- array('table' => 'stock', 'base_records' => $identifiers),
- array('type_name' => $property),
- $options
- );
- }
-
- // Else we have a simple case and we can just use chado_generate_var to get the stock
- else {
-
- // Try to get the stock
- $stock = chado_generate_var(
- 'stock',
- $identifiers,
- $options
- );
- }
-
- // Report an error if $stock is FALSE since then chado_generate_var has failed
- if ($stock === FALSE) {
- tripal_report_error(
- 'tripal_stock_api',
- TRIPAL_ERROR,
- "tripal_get_stock: chado_generate_var() failed to return a stock based on the identifiers
- you passed in. You should check that your identifiers are correct, as well as, look
- for a chado_generate_var error for additional clues. You passed in %identifier.",
- array(
- '%identifier'=> print_r($identifiers, TRUE)
- )
- );
- }
-
- // Else, as far we know, everything is fine so give them their stock :)
- else {
- return $stock;
- }
- }