1. 2.x tripal_stock/tripal_stock.module tripal_stock
2. 1.x tripal_stock/tripal_stock.module tripal_stock

Provides functions for managing chado stocks including creating details pages for each stock

The Tripal Stock Module provides functionality for adding, editing, deleting and accessing chado stocks. The stock module was designed to store information about stock collections in a laboratory. What is called a stock could also be called a strain or an accession. There is a lot in common between a Drosophila stock and a Saccharomyces strain and an Arabidopsis line. They all come from some taxon, have genotypes, physical locations in the lab, some conceivable relationship with a publication, some conceivable relationship with a sequence feature (such as a transgene), and could be described by some ontology term. For more information about the chado Stock Module see the GMOD Wiki Page (http://gmod.org/wiki/Chado_Stock_Module)

Parent topics

File

tripal_stock/tripal_stock.module, line 8

Implements Tripal Stock Module hooks

Functions

Name	Location	Description
chado_stock_access	tripal_stock/tripal_stock.module	Implement hook_access().
chado_stock_delete	tripal_stock/tripal_stock.module	Implements hook_delete(): Handles deleting of chado_stocks
chado_stock_form	tripal_stock/tripal_stock.module	Implements hook_form(): Creates the main Add/Edit/Delete Form for chado stocks
chado_stock_insert	tripal_stock/tripal_stock.module	Implements hook_insert(): Inserts data from chado_stock_form() into drupal and chado
chado_stock_load	tripal_stock/tripal_stock.module	Implements hook_load(): Prepares the chado_stock node
chado_stock_update	tripal_stock/tripal_stock.module	Implements hook_update(): Handles Editing/Updating of main stock info
chado_stock_validate	tripal_stock/tripal_stock.module	Implements hook_validate(): Validate the input from the chado_stock node form
cs_node_load	tripal_stock/tripal_stock.module	Implements Menu wildcard_load hook
get_tripal_stock_admin_form_cleanup_set	tripal_stock/includes/tripal_stock.admin.inc
theme_tripal_stock_edit_ALL_db_references_form	tripal_stock/includes/tripal_stock-db_references.inc	Themes the Edit All Database References for a stock form
theme_tripal_stock_edit_ALL_properties_form	tripal_stock/includes/tripal_stock-properties.inc
theme_tripal_stock_edit_ALL_relationships_form	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_add_ALL_dbreferences_page	tripal_stock/includes/tripal_stock-db_references.inc	Display the ADD Database References to Stock Page
tripal_stock_add_ALL_property_page	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_add_ALL_relationships_page	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_add_chado_properties_navigate	tripal_stock/includes/tripal_stock-secondary_tables.inc
tripal_stock_add_chado_properties_navigate_submit	tripal_stock/includes/tripal_stock-secondary_tables.inc
tripal_stock_add_chado_properties_progress	tripal_stock/includes/tripal_stock-secondary_tables.inc
tripal_stock_add_ONE_dbreference_form	tripal_stock/includes/tripal_stock-db_references.inc	Implements Hook_form(): Handles adding of Database References to Stocks
tripal_stock_add_ONE_dbreference_form_submit	tripal_stock/includes/tripal_stock-db_references.inc	Implements hoook_form_submit(): Actually adds the db reference to the stock
tripal_stock_add_ONE_dbreference_form_validate	tripal_stock/includes/tripal_stock-db_references.inc	Implements hook_form_validate(): Validates the input from tripal_stock_add_ONE_dbreference_form()
tripal_stock_add_ONE_property_form	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_add_ONE_property_form_submit	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_add_ONE_property_form_validate	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_add_ONE_relationship_form	tripal_stock/includes/tripal_stock-relationships.inc	Implements Hook_form(): Handles adding of Relationships to Stocks
tripal_stock_add_ONE_relationship_form_submit	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_add_ONE_relationship_form_validate	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_admin	tripal_stock/includes/tripal_stock.admin.inc	Purpose: Provide administration options for chado_stocks
tripal_stock_admin_validate	tripal_stock/includes/tripal_stock.admin.inc	Implements hook_form_validate(): Validates user input
tripal_stock_back_to_stock_button	tripal_stock/includes/tripal_stock-secondary_tables.inc
tripal_stock_back_to_stock_button_submit	tripal_stock/includes/tripal_stock-secondary_tables.inc
tripal_stock_block	tripal_stock/tripal_stock.module	Purpose: Implement Blocks relating to stock content
tripal_stock_cleanup	tripal_stock/includes/tripal_stock.admin.inc	Remove orphaned drupal nodes
tripal_stock_delete_db_reference	tripal_stock/includes/tripal_stock-db_references.inc	Deletes a given database reference
tripal_stock_delete_property	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_delete_relationship	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_edit_ALL_dbreferences_page	tripal_stock/includes/tripal_stock-db_references.inc	Display the EDIT Database References to Stock Page
tripal_stock_edit_ALL_db_references_form	tripal_stock/includes/tripal_stock-db_references.inc	Implements Hook_form(): Handles adding of Database References to Stocks
tripal_stock_edit_ALL_db_references_form_submit	tripal_stock/includes/tripal_stock-db_references.inc	Implements hook_form_submit(): Actually edits the database references
tripal_stock_edit_ALL_properties_form	tripal_stock/includes/tripal_stock-properties.inc	Implements Hook_form(): Handles adding of Properties & Synonyms to Stocks
tripal_stock_edit_ALL_properties_form_submit	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_edit_ALL_properties_page	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_edit_ALL_relationships_form	tripal_stock/includes/tripal_stock-relationships.inc	Implements Hook_form()
tripal_stock_edit_ALL_relationships_form_submit	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_edit_ALL_relationships_form_validate	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_edit_ALL_relationships_page	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_is_obsolete_form	tripal_stock/includes/tripal_stock-secondary_tables.inc
tripal_stock_is_obsolete_form_submit	tripal_stock/includes/tripal_stock-secondary_tables.inc
tripal_stock_list_dbreferences_for_node	tripal_stock/includes/tripal_stock-db_references.inc	List all database references for a given node
tripal_stock_list_properties_for_node	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_list_relationships_for_node	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_menu	tripal_stock/tripal_stock.module	Implements hook_menu(): Adds menu items for the tripal_stock
tripal_stock_nodeapi	tripal_stock/tripal_stock.module	Implementation of hook_nodeapi(). Display stock information for associated organisms This function also provides contents for indexing
tripal_stock_node_info	tripal_stock/tripal_stock.module	Implements hook_node_info(): registers a stock node type
tripal_stock_perm	tripal_stock/tripal_stock.module	Implementation of hook_perm().
tripal_stock_preprocess_tripal_stock_relationships	tripal_stock/tripal_stock.module
tripal_stock_sync_stock	tripal_stock/includes/tripal_stock.sync_stocks.inc
tripal_stock_sync_stocks	tripal_stock/includes/tripal_stock.sync_stocks.inc
tripal_stock_theme	tripal_stock/tripal_stock.module	Implements hook_theme(): Register themeing functions for this module
tripal_stock_update_db_reference	tripal_stock/includes/tripal_stock-db_references.inc	Updates a Database Reference
tripal_stock_update_property	tripal_stock/includes/tripal_stock-properties.inc
tripal_stock_update_relationship	tripal_stock/includes/tripal_stock-relationships.inc
tripal_stock_views_api	tripal_stock/tripal_stock.module	Implements hook_views_api()