Controlled Vocabulary Module
- 2.x tripal_cv/tripal_cv.module tripal_cv
- 1.x tripal_cv/tripal_cv.module tripal_cv
Provides functions for managing chado controlled vocabularies which are used ubiquitously throughout chado.
File
- tripal_cv/
tripal_cv.module, line 8 - Provides functions for managing chado controlled vocabularies which are used ubiquitously throughout chado.
Functions
Name |
Location | Description |
|---|---|---|
| tripal_cv_add_cvterm_form_fields |
tripal_cv/ |
Form fields in common between add/edit forms |
| tripal_cv_add_cv_form_fields |
tripal_cv/ |
Form fields in common between the cv add & edit form. |
| tripal_cv_add_cv_root_mview |
tripal_cv/ |
Add a materialized view of root terms for all chado cvs. This is needed for viewing cv trees |
| tripal_cv_add_obo_defaults |
tripal_cv/ |
Add's defaults to the tripal_cv_obo table |
| tripal_cv_admin_cv_listing |
tripal_cv/ |
Provide landing page to the new admin pages |
| tripal_cv_coder_ignore |
tripal_cv/ |
Implements hook_coder_ignore(). Defines the path to the file (tripal_cv.coder_ignores.txt) where ignore rules for coder are stored |
| tripal_cv_create_tripal_obo_temp |
tripal_cv/ |
Creates a temporary table to store obo details while loading an obo file |
| tripal_cv_cvtermpath_form |
tripal_cv/ |
Form for re-doing the cvterm path |
| tripal_cv_cvtermpath_form_submit |
tripal_cv/ |
Cvterm path form submit |
| tripal_cv_cvterm_add_form |
tripal_cv/ |
Form for adding cvterms |
| tripal_cv_cvterm_add_form_submit |
tripal_cv/ |
Adds new terms to an existing cv |
| tripal_cv_cvterm_add_form_validate |
tripal_cv/ |
Validate cv add form |
| tripal_cv_cvterm_edit_form |
tripal_cv/ |
Form for editing cvterms |
| tripal_cv_cvterm_edit_form_ajax |
tripal_cv/ |
Ajax callback for the tripal_cv_form |
| tripal_cv_cvterm_edit_form_submit |
tripal_cv/ |
Edits existing controlled vocabulary terms |
| tripal_cv_cvterm_edit_form_validate |
tripal_cv/ |
Validate cvterm edit form |
| tripal_cv_cv_add_form |
tripal_cv/ |
Form to add contolled vocabularies |
| tripal_cv_cv_add_form_submit |
tripal_cv/ |
Submit cv add form |
| tripal_cv_cv_add_form_validate |
tripal_cv/ |
Validation fucntion for tripal_cv_cv_add_form |
| tripal_cv_cv_edit_form |
tripal_cv/ |
Provides the actual "Select CV" form on the Update/Delete Controlled Vocabulary page. This form also triggers the edit javascript @todo Modify this form to use Drupal AJAX |
| tripal_cv_cv_edit_form_submit |
tripal_cv/ |
Submit cv edit form |
| tripal_cv_cv_edit_form_validate |
tripal_cv/ |
Validation fucntion for tripal_cv_cv_edit_form |
| tripal_cv_defaultview_admin_cvs_listing |
tripal_cv/ |
Default Admin View for cv management |
| tripal_cv_defaultview_admin_cvterms_listing |
tripal_cv/ |
Default Admin View for cvterm management |
| tripal_cv_disable |
tripal_cv/ |
Implements hook_disable(). Disable default views when module is disabled |
| tripal_cv_edit_form_ajax |
tripal_cv/ |
Ajax callback for the tripal_cv_form |
| tripal_cv_form_alter |
tripal_cv/ |
Implements hook_form_alter(). Alter Forms |
| tripal_cv_form_fields_validate |
tripal_cv/ |
Generic validation form for shared fields of both the edit and add forms |
| tripal_cv_init |
tripal_cv/ |
Implements hook_init(). Adds CSS and JS needed for this modules rendered content |
| tripal_cv_install |
tripal_cv/ |
Implementation of hook_install(). |
| tripal_cv_menu |
tripal_cv/ |
Implements hook_menu(). Registers all menu items associated with this module |
| tripal_cv_permission |
tripal_cv/ |
Implements hook_permission(). |
| tripal_cv_requirements |
tripal_cv/ |
Implementation of hook_requirements(). |
| tripal_cv_schema |
tripal_cv/ |
Implementation of hook_schema(). |
| tripal_cv_theme |
tripal_cv/ |
Implements hook_theme(). We need to let drupal know about our theme functions and their arguments. We create theme functions to allow users of the module to customize the look and feel of the output generated in this module |
| tripal_cv_uninstall |
tripal_cv/ |
Implementation of hook_uninstall(). |
| tripal_cv_views_api |
tripal_cv/ |
Implements hook_views_api(). Essentially this hook tells drupal that there is views support for for this module which then includes tripal_cv.views.inc where all the views integration code is |
| tripal_cv_views_default_views |
tripal_cv/ |
Implements hook_views_default_views(). |
Sub-Topics
|
Name |
Location | Description |
|---|---|---|
| Ontology Loader |
tripal_cv/ |
Functions to aid in loading ontologies into the chado cv module |