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tripal_ajax_cv_edit |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: The edit controlled vocabulary javascript |
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tripal_cv_add_form |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: Provides the Add controlled vocabulary form |
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tripal_cv_add_form_submit |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: The submit function for the add controlled vocabulary form |
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tripal_cv_add_obo_defaults |
tripal_cv/tripal_cv.install |
Add's defaults to the tripal_cv_obo table |
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tripal_cv_chart |
tripal_cv/includes/charts.inc |
Generates JSON used for generating a Google chart of count data associated
with a controlled vocabulary. An example would be features assigned to
Gene Ontology terms. |
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tripal_cv_count_chart |
tripal_cv/includes/charts.inc |
This function generates an array with fields compatible with Google charts used
for generating pie charts of counts associated with terms in
a controlled vocabulary. An example would be counts of features assigned
to terms in the Sequence Ontology. |
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tripal_cv_cvtermpath_form |
tripal_cv/includes/obo_loader.inc |
Form for re-doing the cvterm path |
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tripal_cv_cvtermpath_form_submit |
tripal_cv/includes/tripal_cv_admin.inc |
Cvterm path form submit |
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tripal_cv_cvterm_callback |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: This function gets called when the selecting of a cv from
the select list triggers it. This function simply rebuilds the form
with new information. No elements are created here |
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tripal_cv_cvterm_form |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: Provides the form that allows adding of terms to an existing
controlled vocabulary |
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tripal_cv_cvterm_form_submit |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: Adds terms to an existing controlled vocabulary |
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tripal_cv_cvterm_form_validate |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: Validates the input for adding a cvterm |
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tripal_cv_cvterm_info |
tripal_cv/includes/trees.inc |
Describe a cvterm (Rendered) |
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tripal_cv_edit_form |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: Provides a form to allow updating/deleteing of controlled vocabularies |
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tripal_cv_edit_form_submit |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: The submit function of the update/delete controlled vocabulary form |
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tripal_cv_edit_page |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: Provides the form for Updating and Deleteing existing
chado controlled vocabularies (See chado cv table) |
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tripal_cv_get_schemas |
tripal_cv/tripal_cv.install |
This function simply defines all tables needed for the module to work
correctly. By putting the table definitions in a separate function we
can easily provide the entire list for hook_install or individual
tables for an update. |
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tripal_cv_init |
tripal_cv/tripal_cv.module |
Implements hook_init().
Adds CSS and JS needed for this modules rendered content |
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tripal_cv_init_browser |
tripal_cv/includes/trees.inc |
@todo Stephen: describe what this function does |
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tripal_cv_init_tree |
tripal_cv/includes/trees.inc |
Generates JSON needed for jsTree Root-level Branches |
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tripal_cv_install |
tripal_cv/tripal_cv.install |
Implementation of hook_install(). |
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tripal_cv_list_form |
tripal_cv/includes/trees.inc |
Form listing CVs |
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tripal_cv_menu |
tripal_cv/tripal_cv.module |
Implements hook_menu().
Registers all menu items associated with this module |
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tripal_cv_perm |
tripal_cv/tripal_cv.module |
Set the permission types that the chado module uses. Essentially we
want permissionis that protect creation, editing and deleting of chado
data objects |
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tripal_cv_schema |
tripal_cv/tripal_cv.install |
Implementation of hook_schema(). |
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tripal_cv_select_form |
tripal_cv/includes/tripal_cv_admin.inc |
Purpose: Provides the actual "Select CV" form on the Update/Delete Controlled
Vocabulary page. This form also triggers the edit javascript
@todo Modify this form to use Drupal AJAX |
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tripal_cv_show_browser |
tripal_cv/includes/trees.inc |
Renders the cv_list form |
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tripal_cv_tree |
tripal_cv/includes/trees.inc |
Generates JSON used for generating an exapandable tree of terms from
a controlled vocabulary that has associated counts. |
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tripal_cv_uninstall |
tripal_cv/tripal_cv.install |
Implementation of hook_uninstall(). |
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tripal_cv_update_tree |
tripal_cv/includes/trees.inc |
|
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tripal_cv_views_api |
tripal_cv/tripal_cv.module |
Implements hook_views_api()
Purpose: Essentially this hook tells drupal that there is views support for
for this module which then includes tripal_cv.views.inc where all the
views integration code is |
