Controlled Vocabulary Module
- 2.x tripal_cv/tripal_cv.module tripal_cv
- 1.x tripal_cv/tripal_cv.module tripal_cv
Provides functions for managing chado controlled vocabularies which are used ubiquitously throughout chado.
File
- tripal_cv/
tripal_cv.module, line 8 - Provides functions for managing chado controlled vocabularies which are used ubiquitously throughout chado.
Functions
Name | Location | Description |
---|---|---|
tripal_cv_admin_cv_listing |
tripal_cv/ |
Provide landing page to the new admin pages |
tripal_cv_cvtermpath_form |
tripal_cv/ |
Form for re-doing the cvterm path |
tripal_cv_cvtermpath_form_submit |
tripal_cv/ |
Cvterm path form submit |
tripal_cv_cvterm_edit_form |
tripal_cv/ |
Form for editing cvterms |
tripal_cv_cvterm_add_form |
tripal_cv/ |
Form for adding cvterms |
tripal_cv_add_cvterm_form_fields |
tripal_cv/ |
Form fields in common between add/edit forms |
tripal_cv_cvterm_edit_form_validate |
tripal_cv/ |
Validate cvterm edit form |
tripal_cv_cvterm_add_form_validate |
tripal_cv/ |
Validate cv add form |
tripal_cv_cvterm_edit_form_submit |
tripal_cv/ |
Edits existing controlled vocabulary terms |
tripal_cv_cvterm_add_form_submit |
tripal_cv/ |
Adds new terms to an existing cv |
tripal_cv_cvterm_edit_form_ajax |
tripal_cv/ |
Ajax callback for the tripal_cv_form |
tripal_cv_cv_edit_form |
tripal_cv/ |
Provides the actual "Select CV" form on the Update/Delete Controlled Vocabulary page. This form also triggers the edit javascript @todo Modify this form to use Drupal AJAX |
tripal_cv_cv_add_form |
tripal_cv/ |
Form to add contolled vocabularies |
tripal_cv_add_cv_form_fields |
tripal_cv/ |
Form fields in common between the cv add & edit form. |
tripal_cv_cv_add_form_validate |
tripal_cv/ |
Validation fucntion for tripal_cv_cv_add_form |
tripal_cv_cv_edit_form_validate |
tripal_cv/ |
Validation fucntion for tripal_cv_cv_edit_form |
tripal_cv_form_fields_validate |
tripal_cv/ |
Generic validation form for shared fields of both the edit and add forms |
tripal_cv_cv_add_form_submit |
tripal_cv/ |
Submit cv add form |
tripal_cv_cv_edit_form_submit |
tripal_cv/ |
Submit cv edit form |
tripal_cv_edit_form_ajax |
tripal_cv/ |
Ajax callback for the tripal_cv_form |
tripal_cv_disable |
tripal_cv/ |
Implements hook_disable(). Disable default views when module is disabled |
tripal_cv_requirements |
tripal_cv/ |
Implementation of hook_requirements(). |
tripal_cv_install |
tripal_cv/ |
Implementation of hook_install(). |
tripal_cv_uninstall |
tripal_cv/ |
Implementation of hook_uninstall(). |
tripal_cv_create_tripal_obo_temp |
tripal_cv/ |
Creates a temporary table to store obo details while loading an obo file |
tripal_cv_schema |
tripal_cv/ |
Implementation of hook_schema(). |
tripal_cv_add_cv_root_mview |
tripal_cv/ |
Add a materialized view of root terms for all chado cvs. This is needed for viewing cv trees |
tripal_cv_add_obo_defaults |
tripal_cv/ |
Add's defaults to the tripal_cv_obo table |
tripal_cv_init |
tripal_cv/ |
Implements hook_init(). Adds CSS and JS needed for this modules rendered content |
tripal_cv_menu |
tripal_cv/ |
Implements hook_menu(). Registers all menu items associated with this module |
tripal_cv_permission |
tripal_cv/ |
Implements hook_permission(). |
tripal_cv_views_api |
tripal_cv/ |
Implements hook_views_api(). Essentially this hook tells drupal that there is views support for for this module which then includes tripal_cv.views.inc where all the views integration code is |
tripal_cv_coder_ignore |
tripal_cv/ |
Implements hook_coder_ignore(). Defines the path to the file (tripal_cv.coder_ignores.txt) where ignore rules for coder are stored |
tripal_cv_form_alter |
tripal_cv/ |
Implements hook_form_alter(). Alter Forms |
tripal_cv_theme |
tripal_cv/ |
Implements hook_theme(). We need to let drupal know about our theme functions and their arguments. We create theme functions to allow users of the module to customize the look and feel of the output generated in this module |
tripal_cv_views_default_views |
tripal_cv/ |
Implements hook_views_default_views(). |
tripal_cv_defaultview_admin_cvs_listing |
tripal_cv/ |
Default Admin View for cv management |
tripal_cv_defaultview_admin_cvterms_listing |
tripal_cv/ |
Default Admin View for cvterm management |
Sub-Topics
Name | Location | Description |
---|---|---|
Ontology Loader |
tripal_cv/ |
Functions to aid in loading ontologies into the chado cv module |