Controlled Vocabulary Module
- 2.x tripal_cv/tripal_cv.module tripal_cv
- 1.x tripal_cv/tripal_cv.module tripal_cv
Provides functions for managing chado controlled vocabularies which are used ubiquitously throughout chado.
File
- tripal_cv/
tripal_cv.module, line 8 - Provides functions for managing chado controlled vocabularies which are used ubiquitously throughout chado.
Functions
Name | Location | Description |
---|---|---|
tripal_cv_views_default_views |
tripal_cv/ |
Implements hook_views_default_views(). |
tripal_cv_views_api |
tripal_cv/ |
Implements hook_views_api(). Essentially this hook tells drupal that there is views support for for this module which then includes tripal_cv.views.inc where all the views integration code is |
tripal_cv_uninstall |
tripal_cv/ |
Implementation of hook_uninstall(). |
tripal_cv_theme |
tripal_cv/ |
Implements hook_theme(). We need to let drupal know about our theme functions and their arguments. We create theme functions to allow users of the module to customize the look and feel of the output generated in this module |
tripal_cv_schema |
tripal_cv/ |
Implementation of hook_schema(). |
tripal_cv_requirements |
tripal_cv/ |
Implementation of hook_requirements(). |
tripal_cv_permission |
tripal_cv/ |
Implements hook_permission(). |
tripal_cv_menu |
tripal_cv/ |
Implements hook_menu(). Registers all menu items associated with this module |
tripal_cv_install |
tripal_cv/ |
Implementation of hook_install(). |
tripal_cv_init |
tripal_cv/ |
Implements hook_init(). Adds CSS and JS needed for this modules rendered content |
tripal_cv_form_fields_validate |
tripal_cv/ |
Generic validation form for shared fields of both the edit and add forms |
tripal_cv_form_alter |
tripal_cv/ |
Implements hook_form_alter(). Alter Forms |
tripal_cv_edit_form_ajax |
tripal_cv/ |
Ajax callback for the tripal_cv_form |
tripal_cv_disable |
tripal_cv/ |
Implements hook_disable(). Disable default views when module is disabled |
tripal_cv_defaultview_admin_cvterms_listing |
tripal_cv/ |
Default Admin View for cvterm management |
tripal_cv_defaultview_admin_cvs_listing |
tripal_cv/ |
Default Admin View for cv management |
tripal_cv_cv_edit_form_validate |
tripal_cv/ |
Validation fucntion for tripal_cv_cv_edit_form |
tripal_cv_cv_edit_form_submit |
tripal_cv/ |
Submit cv edit form |
tripal_cv_cv_edit_form |
tripal_cv/ |
Provides the actual "Select CV" form on the Update/Delete Controlled Vocabulary page. This form also triggers the edit javascript @todo Modify this form to use Drupal AJAX |
tripal_cv_cv_add_form_validate |
tripal_cv/ |
Validation fucntion for tripal_cv_cv_add_form |
tripal_cv_cv_add_form_submit |
tripal_cv/ |
Submit cv add form |
tripal_cv_cv_add_form |
tripal_cv/ |
Form to add contolled vocabularies |
tripal_cv_cvterm_edit_form_validate |
tripal_cv/ |
Validate cvterm edit form |
tripal_cv_cvterm_edit_form_submit |
tripal_cv/ |
Edits existing controlled vocabulary terms |
tripal_cv_cvterm_edit_form_ajax |
tripal_cv/ |
Ajax callback for the tripal_cv_form |
tripal_cv_cvterm_edit_form |
tripal_cv/ |
Form for editing cvterms |
tripal_cv_cvterm_add_form_validate |
tripal_cv/ |
Validate cv add form |
tripal_cv_cvterm_add_form_submit |
tripal_cv/ |
Adds new terms to an existing cv |
tripal_cv_cvterm_add_form |
tripal_cv/ |
Form for adding cvterms |
tripal_cv_cvtermpath_form_submit |
tripal_cv/ |
Cvterm path form submit |
tripal_cv_cvtermpath_form |
tripal_cv/ |
Form for re-doing the cvterm path |
tripal_cv_create_tripal_obo_temp |
tripal_cv/ |
Creates a temporary table to store obo details while loading an obo file |
tripal_cv_coder_ignore |
tripal_cv/ |
Implements hook_coder_ignore(). Defines the path to the file (tripal_cv.coder_ignores.txt) where ignore rules for coder are stored |
tripal_cv_admin_cv_listing |
tripal_cv/ |
Provide landing page to the new admin pages |
tripal_cv_add_obo_defaults |
tripal_cv/ |
Add's defaults to the tripal_cv_obo table |
tripal_cv_add_cv_root_mview |
tripal_cv/ |
Add a materialized view of root terms for all chado cvs. This is needed for viewing cv trees |
tripal_cv_add_cv_form_fields |
tripal_cv/ |
Form fields in common between the cv add & edit form. |
tripal_cv_add_cvterm_form_fields |
tripal_cv/ |
Form fields in common between add/edit forms |
Sub-Topics
Name | Location | Description |
---|---|---|
Ontology Loader |
tripal_cv/ |
Functions to aid in loading ontologies into the chado cv module |