GFF3 Feature Loader
- 2.x tripal_feature/includes/tripal_feature.gff_loader.inc gff3_loader
- 1.x tripal_feature/includes/gff_loader.inc gff3_loader
Provides gff3 loading functionality. Creates features based on their specification in a GFF3 file.
Parent topics
File
- tripal_feature/
includes/ tripal_feature.gff_loader.inc, line 8 - Provides gff3 loading functionality. Creates features based on their specification in a GFF3 file.
Functions
Name |
Location | Description |
|---|---|---|
| tripal_feature_gff3_load_form |
tripal_feature/ |
The form to submit a GFF3 loading job |
| tripal_feature_gff3_load_form_submit |
tripal_feature/ |
Submit the GFF3 loading job |
| tripal_feature_gff3_load_form_validate |
tripal_feature/ |
Validate the GFF3 loading job form |
| tripal_feature_load_gff3 |
tripal_feature/ |
Actually load a GFF3 file. This is the function called by tripal jobs |
| tripal_feature_load_gff3_alias |
tripal_feature/ |
Load any aliases for a feature |
| tripal_feature_load_gff3_dbxref |
tripal_feature/ |
Load the dbxref attribute for a feature |
| tripal_feature_load_gff3_derives_from |
tripal_feature/ |
Load the derives from attribute for a gff3 feature |
| tripal_feature_load_gff3_fasta |
tripal_feature/ |
Load the FASTA sequences at the bottom of a GFF3 file |
| tripal_feature_load_gff3_feature |
tripal_feature/ |
Create the feature record & link it to it's analysis |
| tripal_feature_load_gff3_featureloc |
tripal_feature/ |
Insert the location of the feature |
| tripal_feature_load_gff3_ontology |
tripal_feature/ |
Load the cvterms for a feature. Assumes there is a dbxref.accession matching a cvterm.name |
| tripal_feature_load_gff3_parents |
tripal_feature/ |
Load the parents for a gff3 feature |
| tripal_feature_load_gff3_property |
tripal_feature/ |
Load a preoprty (featurepop) for the feature |
| tripal_feature_load_gff3_target |
tripal_feature/ |
Load the target attribute of a gff3 record |