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chado_feature_add_synonyms |
tripal_feature/includes/tripal_feature.chado_node.inc |
Add synonyms to a feature |
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chado_feature_delete |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_delete(). |
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chado_feature_form |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implementation of hook_form(). |
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chado_feature_insert |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_insert(). |
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chado_feature_load |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_load(). |
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chado_feature_update |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_update(). |
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chado_feature_validate |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implementation of hook_validate(). |
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theme_tripal_feature_seq_extract_form |
tripal_feature/includes/tripal_feature.seq_extract.inc |
Theme the Form to choose which features to extract sequence for |
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tripal_bulk_loader_node_view |
tripal_bulk_loader/includes/tripal_bulk_loader.chado_node.inc |
Implements hook_node_view().
Acts on all content types. |
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tripal_featuremap_node_view |
tripal_featuremap/includes/tripal_featuremap.chado_node.inc |
Implements hook_node_view(). Acts on all content types. |
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tripal_feature_add_organism_count_mview |
tripal_feature/tripal_feature.install |
Creates a materialized view that stores the type & number of features per organism |
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tripal_feature_admin |
tripal_feature/includes/tripal_feature.admin.inc |
Feature Settings page |
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tripal_feature_admin_feature_view |
tripal_feature/includes/tripal_feature.admin.inc |
Launchpad for feature administration. |
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tripal_feature_admin_validate |
tripal_feature/includes/tripal_feature.admin.inc |
Validate the feature settings forms |
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tripal_feature_coder_ignore |
tripal_feature/tripal_feature.module |
Implements hook_coder_ignore(). |
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tripal_feature_color_sequence |
tripal_feature/theme/tripal_feature.theme.inc |
Returns the marked up fasta sequence for the described feature |
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tripal_feature_defaultvalue_user_features |
tripal_feature/tripal_feature.views_default.inc |
Defines the feature user search default view. |
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tripal_feature_defaultview_admin_features |
tripal_feature/tripal_feature.views_default.inc |
The default feature administration view |
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tripal_feature_delete_features |
tripal_feature/includes/tripal_feature.delete.inc |
Function to actually delete the features indicated |
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tripal_feature_delete_form |
tripal_feature/includes/tripal_feature.delete.inc |
A form for indicating the features to delete |
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tripal_feature_delete_form_submit |
tripal_feature/includes/tripal_feature.delete.inc |
Submit for the delete features form |
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tripal_feature_delete_form_validate |
tripal_feature/includes/tripal_feature.delete.inc |
Validation for the delete features form |
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tripal_feature_disable |
tripal_feature/tripal_feature.install |
Implements hook_disable(). |
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tripal_feature_exclude_field_from_feature_by_default |
tripal_feature/tripal_feature.module |
Implements hook_exclude_field_from_<tablename>_by_default() |
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tripal_feature_form_alter |
tripal_feature/tripal_feature.module |
Implementation of hook_form_alter() |
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tripal_feature_get_aggregate_relationships |
tripal_feature/theme/tripal_feature.theme.inc |
Get features related to the current feature to a given depth. Recursive function. |
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tripal_feature_get_matched_alignments |
tripal_feature/theme/tripal_feature.theme.inc |
This function is for features that align through an intermediate such
as 'EST_match' or 'match'. This occurs in the case where two sequences
align but where one does not align perfectly. Some ESTs may be in a contig
but not all… |
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tripal_feature_help |
tripal_feature/tripal_feature.module |
Implements hook_help(). |
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tripal_feature_install |
tripal_feature/tripal_feature.install |
Implements hook_install(). |
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tripal_feature_job_describe_args |
tripal_feature/tripal_feature.module |
Implements hook_job_describe_args() in order to describe the various feature jobs
to the tripal jobs interface. |
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tripal_feature_load_featurelocs |
tripal_feature/theme/tripal_feature.theme.inc |
Load the locations for a given feature |
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tripal_feature_load_featureloc_sequences |
tripal_feature/theme/tripal_feature.theme.inc |
Get the sequence this feature is located on |
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tripal_feature_load_organism_feature_counts |
tripal_feature/theme/tripal_feature.theme.inc |
Load the arguments for the organism feature counts browser |
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tripal_feature_load_relationships |
tripal_feature/theme/tripal_feature.theme.inc |
Get the relationships for a feature. |
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tripal_feature_menu |
tripal_feature/tripal_feature.module |
Implements hook_menu(). |
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tripal_feature_node_access |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implement hook_node_access(). |
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tripal_feature_node_info |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_node_info(). |
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tripal_feature_node_insert |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_node_insert().
Acts on all content types. |
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tripal_feature_node_presave |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_node_presave().
Acts on all content types. |
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tripal_feature_node_update |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_node_update().
Acts on all content types. |
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tripal_feature_node_view |
tripal_feature/includes/tripal_feature.chado_node.inc |
Implements hook_node_view().
Acts on all content types. |
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tripal_feature_permission |
tripal_feature/tripal_feature.module |
Implements hook_permission(). |
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tripal_feature_preprocess_tripal_feature_alignments |
tripal_feature/theme/tripal_feature.theme.inc |
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tripal_feature_preprocess_tripal_feature_proteins |
tripal_feature/theme/tripal_feature.theme.inc |
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tripal_feature_preprocess_tripal_feature_relationships |
tripal_feature/theme/tripal_feature.theme.inc |
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tripal_feature_preprocess_tripal_feature_sequence |
tripal_feature/theme/tripal_feature.theme.inc |
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tripal_feature_preprocess_tripal_organism_feature_counts |
tripal_feature/theme/tripal_feature.theme.inc |
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tripal_feature_requirements |
tripal_feature/tripal_feature.install |
Implements hook_requirements(). |
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tripal_feature_schema |
tripal_feature/tripal_feature.install |
Implementation of hook_schema(). |
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tripal_feature_seq_extract_download |
tripal_feature/includes/tripal_feature.seq_extract.inc |
The page allowing users to download feature sequences |
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tripal_feature_seq_extract_form |
tripal_feature/includes/tripal_feature.seq_extract.inc |
Form to choose which features to extract sequence for |
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tripal_feature_seq_extract_form_submit |
tripal_feature/includes/tripal_feature.seq_extract.inc |
Submit the extract sequence form |
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tripal_feature_seq_extract_form_validate |
tripal_feature/includes/tripal_feature.seq_extract.inc |
Validate the extract sequence form |
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tripal_feature_sort_locations |
tripal_feature/theme/tripal_feature.theme.inc |
Used to sort the feature locs by start position |
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tripal_feature_sort_rel_parts_by_end |
tripal_feature/theme/tripal_feature.theme.inc |
Used to sort the list of relationship parts by start position |
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tripal_feature_sort_rel_parts_by_start |
tripal_feature/theme/tripal_feature.theme.inc |
Used to sort the list of relationship parts by start position |
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tripal_feature_theme |
tripal_feature/tripal_feature.module |
Implements hook_theme(). |
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tripal_feature_uninstall |
tripal_feature/tripal_feature.install |
Implements hook_uninstall(). |
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tripal_feature_views_api |
tripal_feature/tripal_feature.module |
Implements hook_views_api(). |
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tripal_feature_views_default_views |
tripal_feature/tripal_feature.views_default.inc |
Implements hook_views_default_views(). |
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tripal_feature_views_handlers |
tripal_feature/tripal_feature.views.inc |
Implements hook_views_handlers(). |
