Implements hook_update().

Related topics

File

tripal_library/includes/tripal_library.chado_node.inc, line 354

Implements the library node content type

Code

function chado_library_update($node) {

  $node->libraryname = trim($node->libraryname);
  $node->uniquename = trim($node->uniquename);
  $node->description = trim($node->description['value']);

  // update the library record
  $library_id = chado_get_id_from_nid('library', $node->nid);
  $match = array(
    'library_id' => $library_id,
  );

  $values = array(
    'name' => $node->libraryname,
    'uniquename' => $node->uniquename,
    'organism_id' => $node->organism_id,
    'type_id' => $node->library_type,
  );
  $status = chado_update_record('library', $match, $values);
  if (!$status) {
    drupal_set_message(t('Unable to update library.', 'warning'));
    watchdog('tripal_library', 'Update library: Unable to update library where values: %values', 
    array('%values' => print_r($values, TRUE)), WATCHDOG_ERROR);
  }

  // * Properties Form *
  // add the description property
  $properties = chado_retrieve_node_form_properties($node);
  $descrip_id = tripal_get_cvterm(array(
    'name' => 'Library Description',
    'cv_id' => array('name' => 'library_property')
  ));
  $properties[$descrip_id->cvterm_id][0] = $node->description;

  $details = array(
    'property_table' => 'libraryprop', // the name of the prop table
    'base_table' => 'library', // the name of your chado base table
    'foreignkey_name' => 'library_id', // the name of the key in your base table
    'foreignkey_value' => $library_id // the value of the library_id key
  );
  chado_update_node_form_properties($node, $details, $properties);

  // * Additional DBxrefs Form *
  $details = array(
    'linking_table' => 'library_dbxref', // the name of your _dbxref table
    'foreignkey_name' => 'library_id', // the name of the key in your base table
    'foreignkey_value' => $library_id // the value of the library_id key
  );
  chado_update_node_form_dbxrefs($node, $details);

}