Related topics

File

tripal_cv/includes/obo_loader.inc, line 161

Tripal Ontology Loader

Code

function tripal_cv_load_obo_v1_2_id($obo_id, $jobid = NULL) {

  // get the OBO reference
  $sql = "SELECT * FROM {tripal_cv_obo} WHERE obo_id = %d";
  $obo = db_fetch_object(db_query($sql, $obo_id));

  // if the reference is for a remote URL then run the URL processing function
  if (preg_match("/^http:\/\//", $obo->path) or preg_match("/^ftp:\/\//", $obo->path)) {
    tripal_cv_load_obo_v1_2_url($obo->name, $obo->path, $jobid, 0);
  }
  // if the reference is for a local file then run the file processing function
  else {
    // check to see if the file is located local to Drupal
    $dfile = $_SERVER['DOCUMENT_ROOT'] . base_path() . $obo->path;
    if (file_exists($dfile)) {
      tripal_cv_load_obo_v1_2_file($obo->name, $dfile, $jobid, 0);
    }
    // if not local to Drupal, the file must be someplace else, just use
    // the full path provided
    else {
      if (file_exists($obo->path)) {
        tripal_cv_load_obo_v1_2_file($obo->name, $obo->path, $jobid, 0);
      }
      else {
        print "ERROR: counld not find OBO file: '$obo->path'\n";
      }
    }
  }
}