Ontology Loader
- 2.x tripal_cv/includes/tripal_cv.obo_loader.inc tripal_obo_loader
- 1.x tripal_cv/includes/obo_loader.inc tripal_obo_loader
@file Tripal Ontology Loader
Parent topics
File
- tripal_cv/
includes/ obo_loader.inc, line 2 - Tripal Ontology Loader
Functions
Name |
Location | Description |
|---|---|---|
| tripal_cv_load_obo_v1_2 |
tripal_cv/ |
|
| tripal_cv_load_obo_v1_2_file |
tripal_cv/ |
|
| tripal_cv_load_obo_v1_2_id |
tripal_cv/ |
|
| tripal_cv_load_obo_v1_2_url |
tripal_cv/ |
|
| tripal_cv_load_update_cvtermpath |
tripal_cv/ |
|
| tripal_cv_obo_add_cvterm_dbxref |
tripal_cv/ |
Add database reference to cvterm |
| tripal_cv_obo_add_cvterm_prop |
tripal_cv/ |
Add property to CVterm |
| tripal_cv_obo_add_dbxref |
tripal_cv/ |
Add Database Reference |
| tripal_cv_obo_add_relationship |
tripal_cv/ |
Add a cvterm relationship |
| tripal_cv_obo_add_synonyms |
tripal_cv/ |
|
| tripal_cv_obo_form |
tripal_cv/ |
Purpose: Provides the form to load an already existing controlled Vocabulary into chado |
| tripal_cv_obo_form_submit |
tripal_cv/ |
Purpose: The submit function for the load ontology form. It registers a tripal job to run the obo_loader.php script |
| tripal_cv_obo_get_term |
tripal_cv/ |
|
| tripal_cv_obo_parse |
tripal_cv/ |
Actually parse the OBO file |
| tripal_cv_obo_process_term |
tripal_cv/ |
|
| tripal_cv_obo_process_terms |
tripal_cv/ |
|
| tripal_cv_obo_quiterror |
tripal_cv/ |